Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu5g02422 ATGGCTTTCAACCTCACACACTCCACACTACCTCCCTCTTCTTCCATTTCACACCATTTTTATGTTCATACTCTTTCAAAGCCTTTTTTTCTTTCACACTCCAAAATCTCAAACTCCCCTATCTCCAAAACCCTTTGTCTTTGTGCATCACCATCTAACACCATCCATCCTTCACCAACCCCCATTTTCCTCCCATATCTCCAACAAGAACAAGAACCAGAAGAACAAGAGGTCATAGAAACAATAGAAGAAGAAGAAGTAGAAGAAGCTCGTGACCCAGATGATCCAATCTACAAATTCTTCAAAACCCGCACTAGGATTTCCTTCCAAGACCCGGGAAAAGAAGGAAGGTTGTCGCTTCAGAAGAACCGTCGCATATCATGGCACCTTGCTTCTGAACTTGTTGAAGAAGAATCTGTAACGGGTTTGGAAGATGGTTCCTTGTTGGCTGAAGAAAAGAAAGAAAGGGTGTGTGAGAAAAAGGATTTGCCGTTACCTGAGGGGATTGTGGGAGAGATTGTTCAGCTTGCAAGGAACTTGCCTCAGAATATTACTCTGGAAGAGGGTTTGGTTGAATACGAAGGAAGGGTTAGTGAGAAAGATTGTTGGGAGGTTTTGAAATCACTTGGGGTGGAGCACCTTCTGGTGTCTTGTCTGTATTTCTTTCAGTGGATGAGGTCGCAGGAACCTTCACTGGTTACACCTCGGGCTTGCACTGTGTTGTTTCCTTTGTTGGGGAAGGCGAGGATGGCTGATAAGTTGATGGTTTTGTTCTCAAACTTACCATCCACCAAGGAGTTCCGAGATGCTCATGTTTACAATGCCGCAATTTCAGGTCTTCTTTCTAGTGGCAGGTACGAAGATGCTTGGAAAGTGTATGAGTCAATGGAAGAGGATAATGTTCTTCCTGATCACGTGACATGTTCAATTATGGTTATTGTTATGAGAAAACTTGGCCACAGTGCAAAAGATGCATGGCAATTTTTTGAAAAAATGAATGGAAAAGGAGTCAAATGGGGTGAAGAAGTCCTAGGTGCACTCATAAAGTCATTTTGTGTTGAGGGTTTGATGAGGGAAGCTCTCATCATCCTATCTGAAATGGAGAAGAAAGGGGTTTCCCCAAATGCTATTATGTACAACACCCTGATGGATGCATATTGTAAATCCAACCGTGTAGAAGAAGCTGAAGGCCTTTTTGTTGAGATGAAAGCTAAAGGGATTAAGCCCACTGAAGCTACGTTCAACATTCTAATGTATGCATACAGCAGAAAAATGCAGCCTAAGATCGTGGAGAAGCTGATTGCTGAAATGCTGGATGTGGGGTTGAAACCAAATGCCAAATCATATACTTGTCTTGTCAGTGCGTATGGGAAGCAGAAAAGGATGAGTGACATGGCTGCAGATACATTCTTGAAGATGAAGAAAGATGGTATTAAACCCACTTCACATTCTTACACAGCTCTTATCCATGCATATTCAGTTAGTGGCTGGCATGAGAAAGCTTATGCAGCATTTGAAAACATGCAAAGGGAAGGTGTTAAACCATCCATAGAAACCTACACTGCATTACTAGATGCATTTAGACGAGCTGGTGATACTGAAACATTAATGAAAATATGGAAGTTGATGAGGAGGGAGAAAGTTGAAGGAACACGTGTGACATTCAATACTCTTGTTGATGGTTTTGCTAAGCATGGTCACTACAAGGAAGCAAGAGATGTAATATCTCAATTTGGGAAAGTTGGACTGCATCCAACATTGTTGACGTACAATATGCTGATGAATGCATATGCACGAGGAGGGCGACACTCAAAGCTGCCAGAGTTGTTGGAAGAGATGGCAGATCGTAACTTAAAGCCAGATTCAGTAACTTACTCAACTATCATATATGCATTTCTCCGCGTTCGAGATTTTTCACAGGCATTCTTTTATCACCAGGAGATGGTCAAGAAGGGTCTGGTAATGGATGCCAATTCTTACCAGAGACTTCGGGCGATTCTGGATGATAAAGCTTCAAGAAAAAACAGAACGGATAGGAGATCCTTGATTGGTGTAGTTAGAAATAAGATGGGTATTGTGAAACCTAAGAGGAAAAAGGACGAGTTATGGAAGTACAGGAAAAGACATGTTAAAAACAGTAATTCTATTCCTTCTCGTGAACATTTAGACGTGATTCTTGAAGACTTACCTGAAGAGTACGGTCTTATATTCTCCATTGTTGAAAGCGATTTTGATCCCTTCCAATGA 2247 0.4166 MAFNLTHSTLPPSSSISHHFYVHTLSKPFFLSHSKISNSPISKTLCLCASPSNTIHPSPTPIFLPYLQQEQEPEEQEVIETIEEEEVEEARDPDDPIYKFFKTRTRISFQDPGKEGRLSLQKNRRISWHLASELVEEESVTGLEDGSLLAEEKKERVCEKKDLPLPEGIVGEIVQLARNLPQNITLEEGLVEYEGRVSEKDCWEVLKSLGVEHLLVSCLYFFQWMRSQEPSLVTPRACTVLFPLLGKARMADKLMVLFSNLPSTKEFRDAHVYNAAISGLLSSGRYEDAWKVYESMEEDNVLPDHVTCSIMVIVMRKLGHSAKDAWQFFEKMNGKGVKWGEEVLGALIKSFCVEGLMREALIILSEMEKKGVSPNAIMYNTLMDAYCKSNRVEEAEGLFVEMKAKGIKPTEATFNILMYAYSRKMQPKIVEKLIAEMLDVGLKPNAKSYTCLVSAYGKQKRMSDMAADTFLKMKKDGIKPTSHSYTALIHAYSVSGWHEKAYAAFENMQREGVKPSIETYTALLDAFRRAGDTETLMKIWKLMRREKVEGTRVTFNTLVDGFAKHGHYKEARDVISQFGKVGLHPTLLTYNMLMNAYARGGRHSKLPELLEEMADRNLKPDSVTYSTIIYAFLRVRDFSQAFFYHQEMVKKGLVMDANSYQRLRAILDDKASRKNRTDRRSLIGVVRNKMGIVKPKRKKDELWKYRKRHVKNSNSIPSREHLDVILEDLPEEYGLIFSIVESDFDPFQ 748
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu5g02422 748 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 340 374 IPR002885 -
Vimu5g02422 748 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 481 515 IPR002885 -
Vimu5g02422 748 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 445 480 IPR002885 -
Vimu5g02422 748 Gene3D Tetratricopeptide repeat domain 322 462 IPR011990 GO:0005515
Vimu5g02422 748 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 516 550 IPR002885 -
Vimu5g02422 748 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN 3, MITOCHONDRIAL 431 661 - -
Vimu5g02422 748 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 586 620 IPR002885 -
Vimu5g02422 748 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 551 585 IPR002885 -
Vimu5g02422 748 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 375 409 IPR002885 -
Vimu5g02422 748 Gene3D Tetratricopeptide repeat domain 172 321 IPR011990 GO:0005515
Vimu5g02422 748 Gene3D Tetratricopeptide repeat domain 568 679 IPR011990 GO:0005515
Vimu5g02422 748 Gene3D Tetratricopeptide repeat domain 463 567 IPR011990 GO:0005515
Vimu5g02422 748 Pfam Pentatricopeptide repeat domain 505 560 IPR002885 -
Vimu5g02422 748 Pfam Pentatricopeptide repeat domain 433 492 IPR002885 -
Vimu5g02422 748 NCBIfam pentatricopeptide repeat 448 481 IPR002885 -
Vimu5g02422 748 NCBIfam pentatricopeptide repeat 377 411 IPR002885 -
Vimu5g02422 748 NCBIfam pentatricopeptide repeat 519 549 IPR002885 -
Vimu5g02422 748 NCBIfam pentatricopeptide repeat 589 622 IPR002885 -
Vimu5g02422 748 NCBIfam pentatricopeptide repeat 413 446 IPR002885 -
Vimu5g02422 748 NCBIfam pentatricopeptide repeat 272 304 IPR002885 -
Vimu5g02422 748 NCBIfam pentatricopeptide repeat 346 376 IPR002885 -
Vimu5g02422 748 NCBIfam pentatricopeptide repeat 553 586 IPR002885 -
Vimu5g02422 748 NCBIfam pentatricopeptide repeat 623 657 IPR002885 -
Vimu5g02422 748 NCBIfam pentatricopeptide repeat 483 516 IPR002885 -
Vimu5g02422 748 Pfam PPR repeat 346 372 IPR002885 -
Vimu5g02422 748 Pfam PPR repeat family 269 312 IPR002885 -
Vimu5g02422 748 Pfam PPR repeat family 586 632 IPR002885 -
Vimu5g02422 748 Pfam PPR repeat family 374 421 IPR002885 -
Vimu5g02422 748 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 621 655 IPR002885 -
Vimu5g02422 748 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 269 303 IPR002885 -
Vimu5g02422 748 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 410 444 IPR002885 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu5g02422 Vimu-Chr5 34889895 34894981 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu5g02422 245 663 Glycosyltransferase AT1G05670 26.429 2.83e-47 177
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu5g02422 - - ccaj:109799145 1188.33