Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu5g02420 TTGATGAGAAAAATGAAGGCGTGGAGGAGGCTGTTCTATGTTGCGGTGTTTGAGGCGGCGTTGATCGGAATGGGAAGCGGCCATGATTATCGGGAGGCATTGTCGAAGGCTGTTATGTTCTTCGAGGGACAGCGATCGGGATTCCTGCCGCAGGATCAGAGACTGAGTTGGCGACAGAACTCCGGTCTCAGTGACGGTTGGAACTACAACACGGATCTCACCGGCGGTTACTACGACGCCGGCGACAACGTGAAATTCGGGTTTCCGATGGCCTTCACCACCACAATGCTGGCATGGAGCGTGCTGGAATTCGGAGACGTCATGCCTCCCAATGAGCTCAGGAACGCCCTCGTCGCAGTTCGTTGGGCCACTGATTATCTTCTCAAGACTCTTTCTCAGCCCGATCGGATCTTCGTTCAGGTGGGTGATCCAAACTCAGATCACGATTGTTGGGAGAGGCCAGAGGACATGGATACAGCGAGGACTACGTATGCTATCGACGCACCAAACGCCGCTTCCGATGTCGCCGGCGAAACCGCCGCCGCACTAGCAGCGTCATCCATGGCGTTCCGGTCATCAGACCCCGGTTACTCAGAGACATTGCTTCGAAATGCTATTACTGCCTTTGAATTTGCAGATAACTACAGGGGTGCTTACAGTGACCATGAAAATGTCAAGTATAATGCCTGCCCTTATTACTGTGATTTTAATGGCTATCAGGATGAGCTGTTATGGGGAGCTGCATGGCTAAGGAGGGCGACTGAGGACGATAATTTCCTGAACTACATTCAAAGCAATGGCAAAACTCTTGGTGCAGATGACACCATCAATGAGTTTGGTTGGGACAACAAGCATGCTGGCCTCAACGTCCTTCTCTCCAAGGAAGTTATAGAAGGAAACATGTACTCTCTTGAGTCCTACAAGTCTTCAGCAGAGAGCTTCATTTGCACAGTGATACCTGAATCACCAAGCTCAACCATGGAGTACACACCTGGTGGACTTGTGTACAGACCAGGAGGCAGCAACTTGCAACATGTAACTTCAATTGCTTTCCTTGAACTGGTATATGCCAATTACCTAACACACACTTCAGAAGCCATCCCTTGTGGCAATGTCTATGTCAGTGCACAAACTCTTCGCCAACATGCTAAGAGACAAGTTGATTACATTTTGGGTGATAACCCAATGGGACTATCCTACATGGTTGGCTATAGCAACTACTATCCTCAACGTATTCATCATCGTGCCTCTTCTTTGCCTTCCATCAAGGATCATCCCCAGTTCATTGCATGCAAAGAAGGTTCAATCTACTACAACTCAACAAATCCCAATCCTAATGTACTCGTTGGTGCCATTGTTGGAGGACCTGACGAAAATGATGATTATCTCGATGATCGATCTGATTTTAGGCAATCTGAACCTACCACGTACATTAATGCACCTTTTATTGGAGTGTTAGCATACTTTGCTGCAAATCCCAACTTTAGTTGA 1491 0.4816 MMRKMKAWRRLFYVAVFEAALIGMGSGHDYREALSKAVMFFEGQRSGFLPQDQRLSWRQNSGLSDGWNYNTDLTGGYYDAGDNVKFGFPMAFTTTMLAWSVLEFGDVMPPNELRNALVAVRWATDYLLKTLSQPDRIFVQVGDPNSDHDCWERPEDMDTARTTYAIDAPNAASDVAGETAAALAASSMAFRSSDPGYSETLLRNAITAFEFADNYRGAYSDHENVKYNACPYYCDFNGYQDELLWGAAWLRRATEDDNFLNYIQSNGKTLGADDTINEFGWDNKHAGLNVLLSKEVIEGNMYSLESYKSSAESFICTVIPESPSSTMEYTPGGLVYRPGGSNLQHVTSIAFLELVYANYLTHTSEAIPCGNVYVSAQTLRQHAKRQVDYILGDNPMGLSYMVGYSNYYPQRIHHRASSLPSIKDHPQFIACKEGSIYYNSTNPNPNVLVGAIVGGPDENDDYLDDRSDFRQSEPTTYINAPFIGVLAYFAANPNFS 496
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu5g02420 496 SUPERFAMILY Six-hairpin glycosidases 16 491 IPR008928 GO:0005975
Vimu5g02420 496 Gene3D - 27 492 IPR012341 GO:0005975
Vimu5g02420 496 PANTHER ENDO-1,4-BETA-GLUCANASE 18 490 - -
Vimu5g02420 496 ProSitePatterns Glycosyl hydrolases family 9 (GH9) active site signature 2. 389 415 IPR018221 -
Vimu5g02420 496 ProSitePatterns Glycosyl hydrolases family 9 (GH9) active site signature 3. 462 480 IPR033126 -
Vimu5g02420 496 FunFam Endoglucanase 26 494 - -
Vimu5g02420 496 Pfam Glycosyl hydrolase family 9 30 486 IPR001701 GO:0004553|GO:0005975
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu5g02420 Vimu-Chr5 34878969 34883718 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu5g02420 26 492 Glycoside Hydrolase AT1G70710 61.456 0.0 608
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu5g02420 K01179 - gmx:100101849 933.324