Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu5g02404 TTGTTATTGAATTCCCGTATATCTCACGTAACAGGAACAAAGTTGTCAGAAGATAGCAGGAAATATGGTGCAGAAAATACATGTACCAGTGGTAATACACTGAGTAGAGCTGCACTAAGTTTTGCGCAAGCACATGCTCAAACAGAGAAGGAGCGTGGAAACTTACTAAAAGCTCTTGGTACACAGGTTGCGGAGCCCTTAAGGGCAATGGTGGTGGGAGCTCCATTGGAGGATGCACGGCATCTTGCTCAACGTTATGACAGAATGCGGCAAGAAGCTGAAGCCCAGGCTATTGAAGTTTCTAAACGTCAGGCAAAAGTAAGAGAAATGCCACCTAGTGCTGAGAATTCTATGAAATTAGACGCAGCTGAAGCAAAGCTGCAAGATCTGAAGACAAACATGACCATACTGGGGAAGGAAGCAGCTGCAGCATTGGCCGCTGTTGAAGCACAGCAACAGAGGTTAACTCTTCAGCGTCTTATAGCTATGGTTGAAGCAGAGCGTGCCTATCATCAAACAGTCCTGCAAATACTTGATCAGCTCGAGGGGGAGATGATATCAGAACAACGACGAATTGAAACCCCTCCTATTCCTAGTCTGGATAACAGCATGCCACCACCTCCGTCTTATGAAGAAGTGAATGGTGTCTACGCATCTCAGGCACATAATGGAACAACAGATAGCATGGGTTACTTCTTAGGAGAGGTTTTATTTCCATATTCTGCTGTATCCGAAGTGGAGCTAAATCTATCAGTTGGTGATTACATTGTTGTTCGAAAGGTGACAAACAGCGGATGGGCGGAGGGCGAATGCAAAGGCAAGGCAGGTTGGTTTCCGTTTAGTTACATTGAAAGGAGGGAACGGGTTCTTGCAAGTAAGGTGGCTGAAGTGTTTTAA 897 0.4548 MLLNSRISHVTGTKLSEDSRKYGAENTCTSGNTLSRAALSFAQAHAQTEKERGNLLKALGTQVAEPLRAMVVGAPLEDARHLAQRYDRMRQEAEAQAIEVSKRQAKVREMPPSAENSMKLDAAEAKLQDLKTNMTILGKEAAAALAAVEAQQQRLTLQRLIAMVEAERAYHQTVLQILDQLEGEMISEQRRIETPPIPSLDNSMPPPPSYEEVNGVYASQAHNGTTDSMGYFLGEVLFPYSAVSEVELNLSVGDYIVVRKVTNSGWAEGECKGKAGWFPFSYIERRERVLASKVAEVF 298
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu5g02404 298 Gene3D SH3 Domains 219 296 - -
Vimu5g02404 298 Coils Coil 147 167 - -
Vimu5g02404 298 Coils Coil 76 103 - -
Vimu5g02404 298 Gene3D Arfaptin homology (AH) domain/BAR domain 7 194 IPR027267 -
Vimu5g02404 298 PANTHER SH3 DOMAIN-CONTAINING 13 286 - -
Vimu5g02404 298 ProSiteProfiles Src homology 3 (SH3) domain profile. 229 288 IPR001452 GO:0005515
Vimu5g02404 298 SMART SH3_2 232 287 IPR001452 GO:0005515
Vimu5g02404 298 SUPERFAMILY SH3-domain 194 286 IPR036028 GO:0005515
Vimu5g02404 298 Coils Coil 113 140 - -
Vimu5g02404 298 Pfam Variant SH3 domain 236 284 IPR001452 GO:0005515
Vimu5g02404 298 SUPERFAMILY BAR/IMD domain-like 12 185 IPR027267 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu5g02404 Vimu-Chr5 34732968 34735180 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu5g02404 - - vum:124835128 550.436
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu5g02404 5 34732968 34735180 Vimu5g02404 5 34732968 34735180 ECH