Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu5g02402 ATGGCATTCAAACTCAAATCACTACCTCTTCCTTACTCTCTTCACTCCTCTACCCGCCAAAACCCTAATTTCACGCTTTCGAACCATCGTCTTCCTCGTCGTTTCTCTGCACCTTATCTTCCTCTCAGTATCTGTCTCTCAACCACAGCTTCAGCATCCACGTTTCATCGCCCTGCCGCCGTAACCGCTCGCGCTGTTCGAAGTGATGAAATCGCCAACGAAGGCGAAGAAGACAAAGATGAAGAATTATCGAGGCAGGGTGAGAAAAAGGAGCTAGTAAATCAAGGAATATGGAGTCAGATGAAGGACATTGTGATGTTTACAGGTCCAGCAGCCGGACTTTGGATATGTGCACCACTCATGAGTCTCATCGATACTGCAGTTATTGGTCAGAGAAGCTCCGTTGAACTTGCTGCTCTAGGTCCTGCTACTGTTGTTTGTGATTACATGAGCTACGTGTTTATGTTTCTACCCATTGCTACTTCCAATATGGTTGCCACTGCCCTTGCTAAACAGGATAAAGAAGAAGTACAACACTACATATCTGTCTTGCTTTTTGTTGGGTTATCTTGTGGCATTGCGATGCTTTTGTTCACTAGGCTATTTGGTGCTGCAATAATAACTGCTTTCACCGGACCAAAGAATGCACACGTAGTACCTGCAGCTAGCAGTTATGTAAAGATTCGAGGCTTGGCATCGCCTGCCTTACTTGTTGGATGGGTTGCTCAGAGTGCAAGTCTTGGTATGAAAGATTCTTGGGGACCCTTGAAAGCTTTGGCTGCTGCTAGTTTTATAAATATAAGTGGTTGTATAATTTTGTGCATCTATTTAGGCTACGGTATTGTAGGGGCAGCATGGGCTACAATGGTTTCACAAGTTGTTGCTGCTTGCATGATGATTCACACTCTAAACATGAAGGGATATAATGCACTTGCTTTCTCCATTCCTTCAGGGAAGGAACTTTTGACGATATTTGGGCTTGCTGCTCCTGTATTTATGACATTGATGTCAAAGGTGGCTTTCTACTCACTAATTACATATGTTGCTACATCAATGGGTACAAATACAATGGCTGGTCATCAAGTCATGGTCCAAACGTATTCCATGTGTACAGTATGGGGTGAACCTCTCTCTCAAACTGCTCAATCATTTATGCCTGAACTTATATATGGAGTAAATCGGAGTTTATCAAAGGCCCGATTGCTTCTAAGGTCTCTTGTGATAATCGGCGTTATACTTGGCTTATTGTTAGGGATTGTTGGAACTTCAGTTCCTTGGTTATTTCCCTACATTTTTACACCTGATCGGATGGTCACCCAGGAGATGCATAAGGTGCTGATTCCATATTTTATAGCCCTTGCTATAACACCCTCTACTATCAGCCTCGAGGGAACATTGCTGTTGTGCCCCTATTTGACTCACCTTTCAAATCTTCATCTTCCTCATCCTCCCAAAACCTCCTTAGCCACTCCTTTCACAACCATCATATACACCTACGCACCACCACATTTAAACCAACCAGTCTACATACAAAATCTTCCTCATCTCTTTCCAAGGCTTGAGGATGATTTCAATATTATGTTTTGGGCAATGTGGCGGGTGGGCGAGATTTGCATGAATGAAGGAAAATTTCTACTTGGAAGTATTTTTGGAATTCTTAGTACTTTGCATATTGAGATTAATTACGATGGTCCAGTCGATCCAAGAGAAATATCATTCATTGAACAGGAGCAACTTGATATTGGTATCTTGCTTGGTAGGCAACTTCAAACTATTGCCAATGGAACTTTTACTGTAGTTATGCTTGAGGGCGTCATGACCTCTATTGCTAAGCGTTATTGTTATACTTAG 1851 0.4252 MAFKLKSLPLPYSLHSSTRQNPNFTLSNHRLPRRFSAPYLPLSICLSTTASASTFHRPAAVTARAVRSDEIANEGEEDKDEELSRQGEKKELVNQGIWSQMKDIVMFTGPAAGLWICAPLMSLIDTAVIGQRSSVELAALGPATVVCDYMSYVFMFLPIATSNMVATALAKQDKEEVQHYISVLLFVGLSCGIAMLLFTRLFGAAIITAFTGPKNAHVVPAASSYVKIRGLASPALLVGWVAQSASLGMKDSWGPLKALAAASFINISGCIILCIYLGYGIVGAAWATMVSQVVAACMMIHTLNMKGYNALAFSIPSGKELLTIFGLAAPVFMTLMSKVAFYSLITYVATSMGTNTMAGHQVMVQTYSMCTVWGEPLSQTAQSFMPELIYGVNRSLSKARLLLRSLVIIGVILGLLLGIVGTSVPWLFPYIFTPDRMVTQEMHKVLIPYFIALAITPSTISLEGTLLLCPYLTHLSNLHLPHPPKTSLATPFTTIIYTYAPPHLNQPVYIQNLPHLFPRLEDDFNIMFWAMWRVGEICMNEGKFLLGSIFGILSTLHIEINYDGPVDPREISFIEQEQLDIGILLGRQLQTIANGTFTVVMLEGVMTSIAKRYCYT 616
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu5g02402 616 PANTHER PROTEIN DETOXIFICATION 44, CHLOROPLASTIC-RELATED 64 467 IPR044644 -
Vimu5g02402 616 NCBIfam MATE family efflux transporter 110 466 IPR002528 GO:0015297|GO:0016020|GO:0042910|GO:0055085
Vimu5g02402 616 Pfam MatE 111 271 IPR002528 GO:0015297|GO:0016020|GO:0042910|GO:0055085
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu5g02402 Vimu-Chr5 34698780 34704112 Dispersed/Tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu5g02402 K03327 - gmx:100778295 733.791
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu5g02402 5 34698780 34704112 Vimu5g02402 5 34698780 34704112 ECH