Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu5g02392 ATGGTTTCTCTCAATCCAGAAGCACCTGAATTTTTCCCCACTCATAAGTTGAAGCTTCATAAAAAAGAACAACCTTTTACGTGTCCCAATTTCTCAACTTCCTTATTCACTCCTCATAGTCACTACTACTATGTTGTTTCTTCATTCCCCTCTCGAGAACTTCTTCCCTACGTTTACTACCCCACCACCACAACGCTTCCACCACCTTCTATAACTACCCCTTTGACACCACGATCTGAACCATTCTGTATTGATGGAAAGGAACCTAACCTAGTGAACCAGAGGAAGGATGAAGTGGTTGTAGATGAAGACGTAAAGTGTGGCGCAAAAGGGCTTGCGCAGAAACATGTGTTTAAACCTTACATGAGTTACAGAACAATGAATGGTCAACGTTCTGAAGGTACGAGGATGAAGACTTACCTGCCGAGAAAGAAGGGAGAACAGAAGGGTCAACATAAAAGCTTTGACTTTTCAAGTAATGGAAAGATTACGAAGCACCCATATGAACAGTACTGCTGGAGAGGTTATCCTAAGAAGAAAAGGTGTTTTCCTCTGTTGCCTGTTAGAGTGGAGAAGAATGAAACCACTGTCATGATCAGAAATATTCCTAGCAAATACAACCGAGATATGCTGGTGGAGTTTCTGGATAGTCACTGCATGAAAGTGAATGTGAGAGACAAAGAGAAAGGCGAAGAGTCCTGTTCTTTAGCTTTTGATTTTGTTTATTTGCCAATTGATTTCAAAACTGGGATGAACAAGGGTTACGCTTTTGTGAACTTCACCAAACCCCAGGCAGCTTGGAAGTTTCTTTTGACAGCCTCCAACATGAAATGGGACTTGTTCCAGTCCCACAAGATACGTGAAGTGGTTTCTGCACGTTTGCAGGGAAAAGAGACATTAGAGAAGCACTTTGAAACTATGAACTTTCCGTGCGAGTCCGAGGATGTTCTGCCGGTGTGCTTTAACCCACCACGTGATGGTGCTACTAAGGGAAAGCAAATGACTTGTGGGAAACTGTCGAAGCGTGAACAAGTTTGA 1038 0.4277 MVSLNPEAPEFFPTHKLKLHKKEQPFTCPNFSTSLFTPHSHYYYVVSSFPSRELLPYVYYPTTTTLPPPSITTPLTPRSEPFCIDGKEPNLVNQRKDEVVVDEDVKCGAKGLAQKHVFKPYMSYRTMNGQRSEGTRMKTYLPRKKGEQKGQHKSFDFSSNGKITKHPYEQYCWRGYPKKKRCFPLLPVRVEKNETTVMIRNIPSKYNRDMLVEFLDSHCMKVNVRDKEKGEESCSLAFDFVYLPIDFKTGMNKGYAFVNFTKPQAAWKFLLTASNMKWDLFQSHKIREVVSARLQGKETLEKHFETMNFPCESEDVLPVCFNPPRDGATKGKQMTCGKLSKREQV 345
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu5g02392 345 SUPERFAMILY RNA-binding domain, RBD 189 278 IPR035979 GO:0003676
Vimu5g02392 345 Gene3D - 124 298 IPR012677 -
Vimu5g02392 345 Pfam RNA recognition motif 2 195 304 IPR007201 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu5g02392 Vimu-Chr5 34665780 34667272 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu5g02392 - - vun:114170421 550.436
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu5g02392 5 34665780 34667272 Vimu5g02392 5 34665780 34667272 ECH