LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Vimu5g02387	ATGTTCCATGCCAAACAGGACATCATTGTGTCAAATTCCGAGGATAAGAGTATTCGAGTATGGGATGCCACAAAGCGGACTGGAATACAAACTTTCCGCAGAGAGCATGATCGGTTTTGGATTCTTGCAACACATCCTGAAATGAATTTGTTGGCAGCTGGTCATGACAGCGGCATGATAGTCTTTAAGCTGGAGAGAGAAAGACCTGCTTTTGCAGTCAGCGGCGATTCACTATTCTATACGAAAGACCGATTCTTGCGTTTCTATGAATTTTCTACACAGAGAGAGACACAAGTACTTACAATCAGACGACCTGGCTCCTCAACTCTGAATCAATGTCCAAAGACTCTTTCCTATAGTCCTTCTGAAAATGCAATTCTTCTCTGTTCAGACGTGGATGGAGGATCTTATGAGTTATATTGCATATCCAAAGATAGCACAAAGGACAGTTTTGGTAGGGGGGATATGCAAGATCCAAAGAAAGGTGTTGGAGGATCTGCAGTCTTTGTGGCTAGGAATAGATTTGCTGTCCTTGACAAAGGAAGCAACCAAGTCTCTGTAAAAAATCTGAAAAATGAGCTTGTGAAAAAGAGCGCCCTTCCAACTGCTGCAGATGCTATATTCTATGCTGGAACAGGCAACTTGCTATGTAGGTCGGAGGATAGGGTTTTTATATTTGATCTACAGCAGAGGATTGTTCTGGGTGATCTGCAGACCCCTTTTATAAAGTATGTAGTCTGGTCTAATGACATGGAAAATGTTGCTCTGCTCAGTAAACATGCAATTGTCATTGCTAGCAAGAAGCTTGTGCATCAATGCACCCTTCATGAGACAATCCGAGTAAAAAGTGGAGCCTGGGATGACAACGGCATTTTTATTTATACTACATTAAATCATATCAAATACTGCCTCCCCAATGGAGATAGTGGGATAATAAAGACACTGGATGTCCCCATCTATATCACAAAGGTTATTGGAAACACCATCTTTTGCTTGGGTCGGGATGGGAAAAACAAGGCTATAACTGTTGATGCAACAGAATACATCTTTAAGCTTTCCTTGTTGAAGAAAAAATATGACCAGGTAATGAACATGATAAGGAATTCACAGCTTTGTGGGCAGGCTGTGATTGCTTATCTACAACAGAAAGGGTTTCCTGAAGTTGCCCTCCATTTTGTTAAAGATGAGAGAATAAGATTCAATTTGGCTTTGGAGAGTGGCAACATTCAAATTGCTGTTGCATCAGCAACCGCAATTGATGAAAAAGATCACTGGTATCGATTAGGGGTAGAAGCTCTTCGACAAGGTAACTCTGGTATAGTAGAGTATGCATACCAGAGGACCAAAAATTTTGAGAGACTGTCATTCCTTTATCTCATTACTGGTAACGTGGACAAACTTTCAAAAATGTTGAAAATTGCTGAAGTGAAGAATGATGTCATGGGCCAGTTTCACAATGCCCTATATATGGGTGACATAAGAGAGCGTGTCAAGATCTTGGAGAATGTTGGACATTTGTCTCTTGCTTACGTCACTGCATCAGTCCATGGACTACATGATGTTGCTGAAAGGCTTTCAGCTGAACTTGGCGATAATGTTCCATCTGTTCCCAAGGGAAAAGTACAATCTCTCTTGATACCACCATCACCTGTGTCGTGTGGTGGTGATTGGCCTCTTCTCAGGGTCATGCGGGGAATATTTGATGGTGGGTTTAACAATACAGAACGAGATGCAGATGATGAAGAGTATGAGGCTGCTGATGGTGATTGGGGCGAGGAACTTGACATGGTTGATGTTGATGCATTACAAAATGGAGATGTTTCTGCAATTTTGGATGAAGTAGAAGTGGCTGAAGAGGATGACGAAGAAGGGGGATGGGACCTGGAAGATTTAGAGCTCCCACCTGAAGCTGACACCCCAAAAGCTTCTGTCAGTTCACGATCTTCAGTGTTTGTGGCCCCAACACCTGGGATGGCCGTTAGTCAGATATGGATTCAGAGATCATCTCTTGCAGCTGATCATGTAGCTGCTGGCAATTTTGATACTGCGATGAGGTTACTGAACAGGCAACTCGGGATAAGGAACTTTGTCCCCTTGAAATCTATGTTCCTAGATCTGCATACAGGCAGTCATTCCTATCTTCGTGCCTTTTCATCCGCACCAGTTGTAGCAATTGCTGTTGAAAGAGGTTGGACTGAGTCATCCAGTCCAAATGTGAGAGGCCCACCGGCACTTCCTTTCAAATTGTCTCAATTAGATGAAAAACTCAAAGCTGGTTACAAGTCAACAACTGCTGGAAAATTTTCTGATGCTCTTCGCACCTTTATCAATATTCTTCATACCATTCCTTTAATTGTTGTTGAGTCAAGGAGGGAGGTTGATGATGTGAAAGAATTGATTGTCATAGTGAAAGAGTATGTTTTGGGGCTGCGGATGGAACTAAAAAGAAGGGAAATTAAGGACAGTCCAGCACGCCAGCAAGAGCTTGCCGCTTATTTCACCCACTGCAATCTTCAAGTGCCTCACTTGAGGCTAGCTTTGCTGAATGCCATGACTGTCTGCTACAAGGCAAAGAACCTTTCCACGGCAGCTAACTTTGCCAGGAGGTTACTCGAGACCAATCCTACTGTTGAAAACCAAGCTAAGACAGCAAGGCAAGTGCTGGCAGCTGCAGAAAGAAATATGACTGATGCCTTACAATTGAACTATGATTTTCGGAACCCATTTGTAATTTGTGGGGCAACCTATGTGCCCATTTATCGTGGACAAAAGGATATCTCTTGCCCCTATTGTACTTCCCGTTTTGTGCCAACCCAAGAGGGACAGCTATGTGCTGTTTGTGAGCTTTCGGTGGTAGGGGCGGATGCTTCTGGATTGCTCTGCTCTCCTTCCCAGATTCGTTGA	2904	0.4325	MFHAKQDIIVSNSEDKSIRVWDATKRTGIQTFRREHDRFWILATHPEMNLLAAGHDSGMIVFKLERERPAFAVSGDSLFYTKDRFLRFYEFSTQRETQVLTIRRPGSSTLNQCPKTLSYSPSENAILLCSDVDGGSYELYCISKDSTKDSFGRGDMQDPKKGVGGSAVFVARNRFAVLDKGSNQVSVKNLKNELVKKSALPTAADAIFYAGTGNLLCRSEDRVFIFDLQQRIVLGDLQTPFIKYVVWSNDMENVALLSKHAIVIASKKLVHQCTLHETIRVKSGAWDDNGIFIYTTLNHIKYCLPNGDSGIIKTLDVPIYITKVIGNTIFCLGRDGKNKAITVDATEYIFKLSLLKKKYDQVMNMIRNSQLCGQAVIAYLQQKGFPEVALHFVKDERIRFNLALESGNIQIAVASATAIDEKDHWYRLGVEALRQGNSGIVEYAYQRTKNFERLSFLYLITGNVDKLSKMLKIAEVKNDVMGQFHNALYMGDIRERVKILENVGHLSLAYVTASVHGLHDVAERLSAELGDNVPSVPKGKVQSLLIPPSPVSCGGDWPLLRVMRGIFDGGFNNTERDADDEEYEAADGDWGEELDMVDVDALQNGDVSAILDEVEVAEEDDEEGGWDLEDLELPPEADTPKASVSSRSSVFVAPTPGMAVSQIWIQRSSLAADHVAAGNFDTAMRLLNRQLGIRNFVPLKSMFLDLHTGSHSYLRAFSSAPVVAIAVERGWTESSSPNVRGPPALPFKLSQLDEKLKAGYKSTTAGKFSDALRTFINILHTIPLIVVESRREVDDVKELIVIVKEYVLGLRMELKRREIKDSPARQQELAAYFTHCNLQVPHLRLALLNAMTVCYKAKNLSTAANFARRLLETNPTVENQAKTARQVLAAAERNMTDALQLNYDFRNPFVICGATYVPIYRGQKDISCPYCTSRFVPTQEGQLCAVCELSVVGADASGLLCSPSQIR	967

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Vimu5g02387	967	FunFam	Coatomer subunit alpha	389	561	-	-
	Vimu5g02387	967	Pfam	Coatomer (COPI) alpha subunit C-terminus	564	967	IPR010714	GO:0005198\|GO:0005515\|GO:0006886\|GO:0016192\|GO:0030126
	Vimu5g02387	967	MobiDBLite	consensus disorder prediction	618	633	-	-
	Vimu5g02387	967	Gene3D	-	389	561	-	-
	Vimu5g02387	967	ProSiteProfiles	Trp-Asp (WD) repeats circular profile.	1	22	-	-
	Vimu5g02387	967	CDD	Coatomer_WDAD_alpha	69	525	IPR047312	-
	Vimu5g02387	967	Pfam	Coatomer WD associated region	88	517	IPR006692	GO:0005198\|GO:0006886\|GO:0016192\|GO:0030117
	Vimu5g02387	967	ProSiteProfiles	Trp-Asp (WD) repeats profile.	1	31	IPR001680	GO:0005515
	Vimu5g02387	967	SUPERFAMILY	YVTN repeat-like/Quinoprotein amine dehydrogenase	166	343	IPR011044	-
	Vimu5g02387	967	SUPERFAMILY	WD40 repeat-like	2	317	IPR036322	GO:0005515
	Vimu5g02387	967	Gene3D	-	1	65	IPR015943	GO:0005515
	Vimu5g02387	967	PANTHER	COATOMER	1	77	-	-
	Vimu5g02387	967	MobiDBLite	consensus disorder prediction	618	645	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Vimu5g02387	Vimu-Chr5	34573901	34576804	Dispersed

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Vimu5g02387	K05236		-	gmx:100781504	1794.25

Event-related genes

Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Vimu5g02387	5	34573901	34576804	Vimu5g02387	5	34573901	34576804	ECH