Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu5g02375 ATGAATCGGGAAAAGTTGATGAAGATGGCTGGTTCAGTTAGAACTGGAGGGAAGGGTACCGTGAGAAGAAAGAAGAAGGCCGTCCACAAGACCACAACAACAGATGACAAAAGGCTTCAGAGCACTCTGAAGAGAATAGGGGTGAATGCCATTCCTGCAATTGAGGAGGTCAATATCTTTAAGGATGATGTAGTTATCCAGTTTCTAAATCCCAAAGTTCAAGCATCTATTGCTGCAAACACTTGGGTTGTCAGTGGTTCTCCACAAACAAAGAAGTTGCAGGATATACTCCCCAGCATCATCCACCAATTAGGGCCAGATAACCTAGAAAATCTTAAGAAGCTTGCGGAGCAGTTTCAGAAGCAGGCTCCCGAAGGAGCTGCTGGCTCAGCAGAAGCTCAAGAGGAGAATGACGACGACGTCCCAGAGCTTGTTGCAGGACAGGATTTTGAGACAGCTGCCGAGGAGACCAAGGCATCTTAG 483 0.47 MNREKLMKMAGSVRTGGKGTVRRKKKAVHKTTTTDDKRLQSTLKRIGVNAIPAIEEVNIFKDDVVIQFLNPKVQASIAANTWVVSGSPQTKKLQDILPSIIHQLGPDNLENLKKLAEQFQKQAPEGAAGSAEAQEENDDDVPELVAGQDFETAAEETKAS 160
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu5g02375 160 Pfam NAC domain 36 91 IPR002715 -
Vimu5g02375 160 CDD NAC_BTF3 4 119 - -
Vimu5g02375 160 Gene3D - 48 104 IPR038187 -
Vimu5g02375 160 SMART NAC_2 36 91 IPR002715 -
Vimu5g02375 160 PANTHER TRANSCRIPTION FACTOR BTF3 FAMILY MEMBER 1 157 IPR039370 -
Vimu5g02375 160 ProSiteProfiles NAC A/B domain profile. 33 97 IPR002715 -
Vimu5g02375 160 MobiDBLite consensus disorder prediction 119 160 - -
Vimu5g02375 160 MobiDBLite consensus disorder prediction 1 30 - -
Vimu5g02375 160 FunFam Transcription factor BTF3 homolog 48 104 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu5g02375 Vimu-Chr5 34503332 34504796 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu5g02375 K01527 - gmx:100500153 288.5