Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu5g02372 ATGGAGTTGATGAGAGGTGTCAGAAATCAGTTAACTGAACTCATATCTGGTCTAGCTGTTCAAGACATGGCTCCAATGAGCCTGGGTTTATCCCATAGCTTATCCAGATACAAGTTGAAGTTTAGCGCAGATAAGGTGGATACCATGATTGTACAAGCTATTGGTTTACTTGATGATCTTGATAAAGAGTTGAATACATATGCCATGAGGGTTCGTGAATGGTATGGTTGGCATTTTCCCGAACTGACTAAAATAGTACAAGATAACATCCAATATGCAAGGGCAGTCAAGTTGATGGGTGATCGTGTCAATGCAGCTGAGCTTGATTTCTCTGAGATTTTGTCTGAGGAAGTGGAGGCAGAACTTAAGGAGGCAGCTGTAATATCTATGGGAACTGAAATCGGTGATCTTGATTTGGCAAATATTAGGGAACTCTGTGACCAGGTTTTGGCTCTTTCGGAATACAGGGCACAACTATATGATTATCTAAAGAGCAGGATGAACACCATTGCACCCAATTTGACTGCGATGGTTGGGGAGCTTCCTGGTAGCACTGTGCAGATTCTTGGTGCTGAGAAGGCTCTCTTCAGGGCACTGAAAACTAAGCATGCTACTCCCAAGTATGGTCTTATATACCATGCATCTTTGATTGGTCAGGCAGCTGCAAAGTTCAAGGGGAAAATTTCTCGGTCACTAGCTGCAAAGACAGCATTGGCTATTAGGTGTGACGCACTTGGAGATGGCCAAGACAACACCATGGGATTGGAGAACAGAGCCAAGCTTGAGGCGCGATTGAGGAATCTTGAAGGCAAAGAGTTGGGCCGCTTTGCTGGTTCTGCTAAGGGAAAACCTAAGATAGAAGCATATGACAAGGACAGAAAGAAAGGAGCGGGAGGACTGATCACCCCGGCTAAGACATATAATGCTTCGGCTGATTCAGTTATCGGGCAAATTGTCAATTCCGCCATGGATGAGGATAAACAAGAGGCTTCTGTTGCTGATAAAAAGAAAGAAAAGAAGGAAAAGAAGAAAAAGAAGGGGAAAAATGAAGAGGAACCAACTGTTGAAGCTGATGTTGCTGAGGAGCCAGAACCCGAAGTTGAGAAGAAAGAAAAGAAGAAGAAAAGGAAGGAGGCTGCTAGTGAGAGTACTGAGTTGCAGAATGGGAATGGCGACTTGAATGCTGGAGAGAAGAAGAAAAAACGGAAAAAGCATGCAGAGCAAGAAGAATCTCCTGAAATGCCAAGCAAGAAGAAAGGGAAAAAAAAGAAAACTGAAAACTAA 1284 0.4354 MELMRGVRNQLTELISGLAVQDMAPMSLGLSHSLSRYKLKFSADKVDTMIVQAIGLLDDLDKELNTYAMRVREWYGWHFPELTKIVQDNIQYARAVKLMGDRVNAAELDFSEILSEEVEAELKEAAVISMGTEIGDLDLANIRELCDQVLALSEYRAQLYDYLKSRMNTIAPNLTAMVGELPGSTVQILGAEKALFRALKTKHATPKYGLIYHASLIGQAAAKFKGKISRSLAAKTALAIRCDALGDGQDNTMGLENRAKLEARLRNLEGKELGRFAGSAKGKPKIEAYDKDRKKGAGGLITPAKTYNASADSVIGQIVNSAMDEDKQEASVADKKKEKKEKKKKKGKNEEEPTVEADVAEEPEPEVEKKEKKKKRKEAASESTELQNGNGDLNAGEKKKKRKKHAEQEESPEMPSKKKGKKKKTEN 427
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu5g02372 427 PANTHER NUCLEOLAR PROTEIN 5 NUCLEOLAR PROTEIN NOP5 NOP58 1 424 IPR045056 GO:0030515|GO:0031428|GO:0032040
Vimu5g02372 427 Pfam snoRNA binding domain, fibrillarin 56 182 IPR002687 -
Vimu5g02372 427 Pfam snoRNA binding domain, fibrillarin 181 266 IPR002687 -
Vimu5g02372 427 MobiDBLite consensus disorder prediction 363 382 - -
Vimu5g02372 427 Coils Coil 367 387 - -
Vimu5g02372 427 MobiDBLite consensus disorder prediction 394 427 - -
Vimu5g02372 427 ProSiteProfiles Nop domain profile. 145 270 IPR002687 -
Vimu5g02372 427 Gene3D Nop domain 180 270 IPR042239 -
Vimu5g02372 427 FunFam Probable Nucleolar protein 58 19 173 - -
Vimu5g02372 427 MobiDBLite consensus disorder prediction 323 427 - -
Vimu5g02372 427 SMART NOSIC_2 49 101 IPR012976 -
Vimu5g02372 427 Coils Coil 323 352 - -
Vimu5g02372 427 Gene3D - 19 176 - -
Vimu5g02372 427 SUPERFAMILY Nop domain 43 269 IPR036070 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu5g02372 Vimu-Chr5 34488356 34492919 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu5g02372 K14565 - gmx:100775301 647.121