Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu5g02369 ATGTCTTATGTCGCTGTGTTTGGTTGCGTAGCTTTAGATTCGACGGAGTCAATTCTAAATGCCGCCTGTGGGAATTTTGGCCTTCACAGGCTTTTTGATTTTGCAAGCTTTCTCAACAATGACCGGATAAAGCCAGGGGGTGTGCATATTGACTACTATACTTGTATATTTGACATCAATATCTGGCGGTTAGCGGCTGCTAACAACATCATGGATTTATTTTGCAGATTCAATTTGACACAGGAAGCACTCCCTCATCTCAAAGATCAAGTTGTCCTCGCTGCATCCATTGTGAGCAAATCCGGAAAAGTGCTAGTTTCTAGACAGTTTGTGGACATGTCTCGTATCAGAATTGAGGGTCTTCTAGCAGCATTTCCCAAGTTGGTAGGCACCGGAAAGCAGCACACATTTTTTGAGACGGAGAATGTACGCTATGTTTACCAGCCAATAGAAGCACTCTATCTACTTATTATAACAAACAAAAGTAGCAACATACTGGAAGATTTGGCAACTCTGAGACTCCTCTCCAGACTTGTGCCTGAATATTCTTACTCCCTCGATGAAGAGGGTATTTGCGAACATGCATTTGAGTTGATTTTTGCATTTGATGAAGTCATCTCTCTTGGGCACAAGGAAAATGTGACTGTTGCACAAGTTAAGAACTACTGTGAGATGGAGAGTCATGAAGAGAAACTACACAAACTTGTTATGCAGAGCAAAATCAATGAAACTAAGGATGTTATGAAGCGGAAAGCTAGTGAGATTGATAAAAGCAAGGTTGAAAAGAACAAAGGGGATAAAGGGGGATTTGGTCCCTTACAGTCACTAGGCTCTGGAAAAATTGAAAATAGCCTTAGTGATTTGAGCATATCTAGCAGCGGAACTGCTTTTGGAAGTGGCTCTGGTCTCGGATTTGGTTCTGATGTTGATTCCTTTCCTACCAAGTCTAAAGGTCGTCCTACTTCTTCTGCTACTGCTCCACCAAAAGGTCTTGGAATGAAGCTTGGTAAATCCCAAAAGGCAAATCAGTTCTTGGAATCATTGAAAGCAGAAGGTGAGGTCTTTCTTGAAGAAGCTCAGCCAAAACTTGGCCTGTCTCAGGCAGCTGCCCCACCACCTACGGATCCCATCACTTTAACTGTTGAAGAGAAACTAAACGCGACACTAAAACGAGACGGTGGAATCGGTAATTTTGATGTTCAAGGCACAATGTCCCTCCAAATTCTCAGCAAAGAGGATGGACATATTCAAGTTCAGGTCCAGACTGGTGAGAATCAAGCCATCATTTTCAAGACACACCCCAACATGAATAAAGAATTATTTGCCAATGAAAATATACTAGGCCTAAAGGATCCCAATAGACCTTTCCCCACTGGTCAAACTGGTGGTTCTGAAGGTGTCGGTCTCTTAAAGTGGAGAATGCAAAGCACTGATGAATCAATGGTACCGCTGACAATCAACTGCTGGCCTACTACTTCTGGAAACAATACTTCTGTCAGCATCGAGTATGAGGCTTCTTCAATGTTTGATTTGCGGAATGTTTTGATTTCAGTACCTCTTCCATCTCTTCGGGAAGCACCTTCTGTTAATCAGATTGATGGGGAATGGAGTGGATCAATGGAATTTGTTGTTCCGCAAGCTGATCCATCAGCATTCTTCCCCATTTCCATTCATTTTGCGGCAACAGATACATTTAGCAAACTGAAGGTCACCAACACCATACCGCTAAAGGGTGGTAATCCTCCTAAATTTTTTCAGCGGACACAGTTGACCACAGAAAACTACCTGGTTGTGTGA 1797 0.4263 MSYVAVFGCVALDSTESILNAACGNFGLHRLFDFASFLNNDRIKPGGVHIDYYTCIFDINIWRLAAANNIMDLFCRFNLTQEALPHLKDQVVLAASIVSKSGKVLVSRQFVDMSRIRIEGLLAAFPKLVGTGKQHTFFETENVRYVYQPIEALYLLIITNKSSNILEDLATLRLLSRLVPEYSYSLDEEGICEHAFELIFAFDEVISLGHKENVTVAQVKNYCEMESHEEKLHKLVMQSKINETKDVMKRKASEIDKSKVEKNKGDKGGFGPLQSLGSGKIENSLSDLSISSSGTAFGSGSGLGFGSDVDSFPTKSKGRPTSSATAPPKGLGMKLGKSQKANQFLESLKAEGEVFLEEAQPKLGLSQAAAPPPTDPITLTVEEKLNATLKRDGGIGNFDVQGTMSLQILSKEDGHIQVQVQTGENQAIIFKTHPNMNKELFANENILGLKDPNRPFPTGQTGGSEGVGLLKWRMQSTDESMVPLTINCWPTTSGNNTSVSIEYEASSMFDLRNVLISVPLPSLREAPSVNQIDGEWSGSMEFVVPQADPSAFFPISIHFAATDTFSKLKVTNTIPLKGGNPPKFFQRTQLTTENYLVV 598
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu5g02369 598 FunFam Coatomer subunit delta 92 230 - -
Vimu5g02369 598 MobiDBLite consensus disorder prediction 247 276 - -
Vimu5g02369 598 ProSiteProfiles Mu homology domain (MHD) profile. 374 598 IPR028565 -
Vimu5g02369 598 Gene3D - 92 230 - -
Vimu5g02369 598 MobiDBLite consensus disorder prediction 310 335 - -
Vimu5g02369 598 CDD AP_delta-COPI_MHD 375 595 - -
Vimu5g02369 598 CDD Delta_COP_N 93 222 - -
Vimu5g02369 598 PANTHER COATOMER SUBUNIT DELTA 91 598 IPR027059 GO:0006890|GO:0030126
Vimu5g02369 598 SUPERFAMILY SNARE-like 94 231 IPR011012 -
Vimu5g02369 598 SUPERFAMILY Second domain of Mu2 adaptin subunit (ap50) of ap2 adaptor 374 582 IPR036168 -
Vimu5g02369 598 FunFam Coatomer subunit delta 377 489 - -
Vimu5g02369 598 MobiDBLite consensus disorder prediction 247 266 - -
Vimu5g02369 598 Pfam Adaptor complexes medium subunit family 374 536 IPR028565 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu5g02369 Vimu-Chr5 34472149 34478467 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu5g02369 K20471 - gmx:100780122 845.499