Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu5g02367 ATGTCCGGCCCTCTCGACCGTTTCGCCAGACCATGTTTCGAAGGTTTCTCCGGGAGCGACGAGAAGAAGGAGCGGAGATCTGATTTTGAGAACTCCGAGGACGAACGGAGGACCAGAATCGGATCTCTCAAGAAGAAGGCGCTCAATGCGTCGTCCAAGTTCAAACACACGCTGAAGAAGAAGAGCAGCAGAAGGAAGAGCGATGGCCGCGTCAGCTCTGTTTCCATCGAGGATGTTCGGAATTTTGAGGAGCAGCAGGCCGTTGATGCATTTCGCCAGTCCTTGATCATCGACGAAATGCTCCCCGAAAAACATGATGATTACCATGTCATGTTAAGGTTTCTGAAAGCGAGGAAATTTGATGTTGAAAGGGCGAAGCATATGTGGGCTGATATGCTACAATGGAGGAAGGAGTTTGGTGCTGACACTATTATGGAGGATTTTGAGTTCGTAGAATTAAACGAAGTCATGAAGTATTATCCGCATGGTCATCACGGTGTTGATAGGGAGGGAAGGCCTGTTTACATTGAGAGACTTGGGAAAGTGGACCCGAACAAACTTATGCAGGTTACAACCATGGATAGATATGTGAAATACCATGTACGGGAATTTGAGAAAGCTTTTAAGATAAAGTTTCCTGCTTGCACAATTGCCGCCAAAAGGCACATAGATTCAAGCACCACGATATTAGATGTTCAAGGAGTGGGCCTGAAGAACTTTACAAAGTCTGCCCGGGAACTAATTTTGCGGTTACAAAAGATTGATGGTGACAATTACCCTGAGACTCTTTGTCAAATGTTTATCATAAATGCCGGCCCTGGATTTAGGTTACTGTGGAACACCGTCAAGTCTTTCCTTGATCCCAAAACAACTTCAAAGATCCATGTTCTTGGAAATAAGTATCAAAGCAAATTGCTTGAAGTAATCGATGCCAGCGAGTTGCCGGAATTTCTAGGAGGTACATGTACATGTGCAGATCAGGGTGGTTGCCTCAGATCTGATAAGGGACCCTGGAAAAACCCTGAAATTTTGAAGATGATTCTTAGCGGTGAAGCACGAAGAGCAAGGCCTGTTGTAAAAGTTCTAAACAGTGAAGGAAAGGTTATTGCATATGCCAGACCACAATACCCAATGGTAAAAGGTAGTGACACATCCACAGCTGAATCAGGGTCTGAAGCTGAAGATATTGCTTCTCCAAAAGCGATGAAGAGCTACTCTCACCTTAGGTTGACACCTGTTCGTGAGGAAGCTAAGGTTGTTGGAAAGTCGATCTATGTTGGTGGTGGTAACTTGGCTGGGTATGATGAATATGTTCCGATGGTGGACAAAGCTGTTGATGCTGGCTGGAACAAACAAACATCACTCCAGAGGGCTCAAACTTCAAAAGGAACACCTTCCCTCCCTGATCCTCCACAAACTCCCATAGGGGTTCGAGCTCGAATGTTGGGGGCTCTAGCTGCTTTCTTTATGATGCTGTTTACTCTCTTCCATTCAGTCGCATACCGTGTGACCAAGAAACTTCCTGCCTCATCATCTAATGAGGATCAGTGCACTTCTGAGACACCCGTTAGTACAACAAGCGAAGACAACCATCCTCCGTCACCAAATCCAGCACACAGAGAGGCAAATCTCCTTTCCTCAATGGTGAAAAGGTTAGGTGAGCTTGAAGAGAAGGTTGACACACTCCAATCTAAGCCATCTGAGATGCCTTATGAGAAAGTGGAATTGCTAAATGCTGCTGTATGTCGGGTGGATGCTTTGGAAGCAGAGCTAATTGCAACTAAAAAGGCTCTATATGAAGCATTAATGAGGCAAGAAGAGCTGCTTGCTTACATTGATAGTCAAGAAGAAGCTAAGTCGCGGGTAAAAGAAGTTTTGCTGGTGAGTTTTGGCTGGCTGATAAAGGGACTCTGGGAGAGGGCATTTTTTCGAATCATGGTGTTCTTAGTGCCGACACCTTGCACATTAGGTTGA 1974 0.4539 MSGPLDRFARPCFEGFSGSDEKKERRSDFENSEDERRTRIGSLKKKALNASSKFKHTLKKKSSRRKSDGRVSSVSIEDVRNFEEQQAVDAFRQSLIIDEMLPEKHDDYHVMLRFLKARKFDVERAKHMWADMLQWRKEFGADTIMEDFEFVELNEVMKYYPHGHHGVDREGRPVYIERLGKVDPNKLMQVTTMDRYVKYHVREFEKAFKIKFPACTIAAKRHIDSSTTILDVQGVGLKNFTKSARELILRLQKIDGDNYPETLCQMFIINAGPGFRLLWNTVKSFLDPKTTSKIHVLGNKYQSKLLEVIDASELPEFLGGTCTCADQGGCLRSDKGPWKNPEILKMILSGEARRARPVVKVLNSEGKVIAYARPQYPMVKGSDTSTAESGSEAEDIASPKAMKSYSHLRLTPVREEAKVVGKSIYVGGGNLAGYDEYVPMVDKAVDAGWNKQTSLQRAQTSKGTPSLPDPPQTPIGVRARMLGALAAFFMMLFTLFHSVAYRVTKKLPASSSNEDQCTSETPVSTTSEDNHPPSPNPAHREANLLSSMVKRLGELEEKVDTLQSKPSEMPYEKVELLNAAVCRVDALEAELIATKKALYEALMRQEELLAYIDSQEEAKSRVKEVLLVSFGWLIKGLWERAFFRIMVFLVPTPCTLG 657
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu5g02367 657 SMART sec14_4 152 323 IPR001251 -
Vimu5g02367 657 MobiDBLite consensus disorder prediction 507 540 - -
Vimu5g02367 657 Pfam CRAL/TRIO, N-terminal domain 104 131 IPR011074 -
Vimu5g02367 657 SUPERFAMILY CRAL/TRIO domain 154 345 IPR036865 -
Vimu5g02367 657 Gene3D - 76 139 - -
Vimu5g02367 657 Coils Coil 545 565 - -
Vimu5g02367 657 MobiDBLite consensus disorder prediction 507 533 - -
Vimu5g02367 657 FunFam SEC14 cytosolic factor 140 352 - -
Vimu5g02367 657 PRINTS Cellular retinaldehyde-binding protein signature 110 132 - -
Vimu5g02367 657 PRINTS Cellular retinaldehyde-binding protein signature 279 298 - -
Vimu5g02367 657 PRINTS Cellular retinaldehyde-binding protein signature 312 321 - -
Vimu5g02367 657 MobiDBLite consensus disorder prediction 452 466 - -
Vimu5g02367 657 ProSiteProfiles CRAL-TRIO lipid binding domain profile. 152 326 IPR001251 -
Vimu5g02367 657 SUPERFAMILY CRAL/TRIO N-terminal domain 82 148 IPR036273 -
Vimu5g02367 657 SMART CRAL_TRIO_N_2 107 132 IPR011074 -
Vimu5g02367 657 MobiDBLite consensus disorder prediction 1 70 - -
Vimu5g02367 657 CDD SEC14 152 321 IPR001251 -
Vimu5g02367 657 Gene3D - 140 350 IPR036865 -
Vimu5g02367 657 MobiDBLite consensus disorder prediction 452 472 - -
Vimu5g02367 657 PANTHER CRAL-TRIO DOMAIN-CONTAINING PROTEIN YKL091C-RELATED 24 615 - -
Vimu5g02367 657 MobiDBLite consensus disorder prediction 16 42 - -
Vimu5g02367 657 Pfam CRAL/TRIO domain 158 320 IPR001251 -
Vimu5g02367 657 MobiDBLite consensus disorder prediction 49 66 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu5g02367 Vimu-Chr5 34428422 34433122 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu5g02367 85 317 Acyl Lipid Metabolism Gene Families AT5G47730 27.126 7.44e-20 89.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu5g02367 K26544 - gmx:100785793 1096.26