Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu5g02364 ATTCTAGTTTATTTGTTCTGCAGGCTTTTTGGTCCTCTGATGGCAAGTGATTCTTTTGTGATTTCCAATGGCAATGGCAATGGCAATGAAAACGGCAATGGAAAGGCAGAGCCTCTTCCACAGAGAACTTACCAAGCAGTAGTGATTGCCACCAGAGACATGGGCATTTCTAAGGATGGAAAATTGCCCTGGACGTTACCCACTGATCTCAAATTTTTTGATGAGATCACTACTATAACGTCTGATCCGGGGAAGAAGAATGCTGTTGTGATGGGTAGAAAAACATGGGAGAGTATCCCTCCAGAGGATAGGCCTCTTCCTGGTCGCCTTAACGTTGTTCTGACTCGCTCGGGTAGCTTTGATATTGCAACTGCAGAGAATGTTGTAATATGTGGAAGTGTGTCTTCTGCTATGGAACTGTTGGCTGCTTCTCCGTACTGCCTGTCAATTGAGAAAGTATTTCTTACAGGAGGTGGTGAGATATTCAGAGAGGCTCTCAATGCACCTGGATGCGAAGCTGTTCATATTACAGAAATTGAGGCAAGCATTGAGTGTGATACTTTTATGCCTCGAGTTGATACCTCTCTATTTCAGTCATGGTATTCATCATTTCCTTTGGTGGAAGACAACCTCCGCTATTCTTTCAACACTTATGTGCGTGTAAGGAGTTCTCCGGCTGAGTCCCTAGGTCAGAATGCTGATCCAGTTTTTGATAATGGTTCAGACTCTTTAAAATTTGAGGTCGATGAATTTTCTTTTCTTCCGAAATTCATTTATGAGAGACATGAAGAATTTAAGTATCTAAGTTTGGTTCGAGAAATTATTTCTGAAGGCACCATTAAGGATGATAGGACAGGGACTGGTACCTTGTCGAAATTTGGCTGCCAGATGAGGTTTAATCTGCGCAGAAACTTTCCGCTTCTAACAACCAAGAAAGTATTTTGGCGAGGGGTTGTTGAGGAGCTTCTTTGGTTTATCAGCGGCTCAACAAGTGCCAAGGTAATGATATCTGTACCAATCTTTTCCGAGCAGACCATTGGTTTGAGAGAAAGGGAGGAGGGTGACTTAGGACCTGTTTATGGGTTTCAGTGGAGGCACTTTGGAGCCAAGTATACTGACATGCATGCTGACTACTCTGGCCAAGGATTTGATCAGCTTCTGGATGTTATTGACAAGATAAAGCATAACCCCGATGATCGACGGATCATTCTTTCAGCTTGGAATCCATCTGATCTTAAATTGATGGCACTCCCCCCCTGCCACATGTTTGCGCAGTTTTACGTAGCAAATGGGGAATTATCGTGTCAAATGTATCAGCGATCTGCGGACATGGGCCTGGGGGTGCCGTTTAATATTGCATCTTATGCTCTCCTGACATGCATGATTGCTCATGTTTGTGACCTTGTTCCGGGTGATTTTAGTCATGTTATCGGGGATGCACATGTTTACCGCAATCATGTGAGACCTCTTCAGGAACAGCTTCAGAATCAACCCAAACCTTTTCCGATTTTGAAGATTAACCCAGAGAAGAAAGATATAGATTCCTTTGTTGCTGCCGATTTCAAGCTCATAGGATATGACCCTCACAAGAAGATAGAAATGAAGATGGCTGTTTAG 1617 0.4335 ILVYLFCRLFGPLMASDSFVISNGNGNGNENGNGKAEPLPQRTYQAVVIATRDMGISKDGKLPWTLPTDLKFFDEITTITSDPGKKNAVVMGRKTWESIPPEDRPLPGRLNVVLTRSGSFDIATAENVVICGSVSSAMELLAASPYCLSIEKVFLTGGGEIFREALNAPGCEAVHITEIEASIECDTFMPRVDTSLFQSWYSSFPLVEDNLRYSFNTYVRVRSSPAESLGQNADPVFDNGSDSLKFEVDEFSFLPKFIYERHEEFKYLSLVREIISEGTIKDDRTGTGTLSKFGCQMRFNLRRNFPLLTTKKVFWRGVVEELLWFISGSTSAKVMISVPIFSEQTIGLREREEGDLGPVYGFQWRHFGAKYTDMHADYSGQGFDQLLDVIDKIKHNPDDRRIILSAWNPSDLKLMALPPCHMFAQFYVANGELSCQMYQRSADMGLGVPFNIASYALLTCMIAHVCDLVPGDFSHVIGDAHVYRNHVRPLQEQLQNQPKPFPILKINPEKKDIDSFVAADFKLIGYDPHKKIEMKMAV 538
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu5g02364 538 Gene3D Dihydrofolate Reductase, subunit A 29 222 IPR024072 -
Vimu5g02364 538 FunFam Possible thymidylate synthase 258 538 - -
Vimu5g02364 538 Pfam Dihydrofolate reductase 45 220 IPR001796 GO:0004146|GO:0046654
Vimu5g02364 538 Gene3D Thymidylate synthase/dCMP hydroxymethylase domain 257 538 IPR036926 -
Vimu5g02364 538 ProSitePatterns Thymidylate synthase active site. 400 428 IPR020940 GO:0004799|GO:0006231
Vimu5g02364 538 PRINTS Thymidylate synthase family signature 305 326 IPR000398 GO:0004799|GO:0006231
Vimu5g02364 538 PRINTS Thymidylate synthase family signature 415 430 IPR000398 GO:0004799|GO:0006231
Vimu5g02364 538 PRINTS Thymidylate synthase family signature 389 408 IPR000398 GO:0004799|GO:0006231
Vimu5g02364 538 PRINTS Thymidylate synthase family signature 433 459 IPR000398 GO:0004799|GO:0006231
Vimu5g02364 538 PRINTS Thymidylate synthase family signature 471 488 IPR000398 GO:0004799|GO:0006231
Vimu5g02364 538 Pfam Thymidylate synthase 266 538 IPR023451 -
Vimu5g02364 538 CDD DHFR 46 219 IPR001796 GO:0004146|GO:0046654
Vimu5g02364 538 SUPERFAMILY Dihydrofolate reductase-like 43 220 IPR024072 -
Vimu5g02364 538 FunFam Bifunctional dihydrofolate reductase-thymidylate synthase 28 221 - -
Vimu5g02364 538 Hamap Thymidylate synthase [thyA]. 264 538 IPR000398 GO:0004799|GO:0006231
Vimu5g02364 538 ProSiteProfiles Dihydrofolate reductase (DHFR) domain profile. 43 220 IPR001796 GO:0004146|GO:0046654
Vimu5g02364 538 PIRSF DHFR-TS 28 538 IPR012262 GO:0004146|GO:0004799|GO:0006730
Vimu5g02364 538 SUPERFAMILY Thymidylate synthase/dCMP hydroxymethylase 254 538 IPR036926 -
Vimu5g02364 538 NCBIfam thymidylate synthase 351 538 IPR000398 GO:0004799|GO:0006231
Vimu5g02364 538 CDD TS_Pyrimidine_HMase 267 491 IPR023451 -
Vimu5g02364 538 PANTHER THYMIDYLATE SYNTHASE 1 66 538 IPR045097 GO:0016741
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu5g02364 Vimu-Chr5 34403373 34407088 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu5g02364 K13998 - gmx:100786311 945.651
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu5g02364 5 34403373 34407088 Vimu5g02364 5 34403373 34407088 ECH