Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu5g02363 ATGATGACTCCCAAATTTCAAAAGGTAGTCTCCACGGCGGCGTCCGTGGCGGCCACCGTGATGCTCCTCCGCTCGTTCACCCGCAACTATATTCCCCCGGAGTTCCAAAACTACCTCCACTCAAAACTATCGAAACTCCTCTCCTCCTTCTCCACGGAACTCACCCTCGTTATCGACGAATTCAACGGGCTCACTCCGAACCCGCTCTTCGCCGCGGCGCAGCTCTACCTCAAGCCGCAGGAGGCGCCGAACACAAAGCGCTTCCGCGCCACGATGTCTTCGAGATCGCGCCACGTGTCCCTCCTCATGGACGGCAACGACGAGATCACGGACTCCTTCAACGGCGTGCCGTTCCGGTGGAGGCTCGTGTCCCGACGCGGCAAATCGAATTTCGCGGTGCACTTCTTCGAGGTGCGGTTCCACAAGAAGCACCGGGAGATGGTTCTGTCGGAGTATTTTCCGCGCGTGATGAAGGAGGCGGAGGCGGTGCGTGAGCGGAGGAAGACGCTGAGGCTCTTCACGGTGAAGGACATGCGGTTTCGGAGGGGAGGGAGGGGGAGGTTGTGGCAGGGCGTGAATCTTGAGCACCCTGCGACGTTTGCGACTGTGGCGATGGATTGGGAATTGAAGGAGATGATAGTTAGGGATTTGGATAGGTTTGTGGAGAGGAAGGGTTTATATAAGAGTGTTGGGAAGGCGTGGAAGAGAGGGTACTTGCTTTCGGGTCCCCCTGGAACTGGGAAATCGAGTTTGATTGCTGCTATGGCTAATTATCTGAATTTCGATGTCTATGACTTAGAACTCACTGCTGTTAATGGAAATTCTGACCTTAGGAGGTTGTTGATTGCCACCAGGAACCGTTCCATTCTTGTCGTGGAGGACATTGATTGCTCCCTTCATTTGCAGGATAGGCTTGCAAAACCTAAATCATCACAACCCCACCGCTTCATCCCACGCCATTTTCACTCATTTCCAGCACCCCAGGTGACATTATCGGGGTTCCTGAATTTCATAGATGGGTTGTGGTCGAGTTGTGGGAATGAGAGGATCGTAGTGTTCACCACGAATCATAAGGAGAAATTGGACCCTGCTCTCTTGCGCCCTGGGCGTATGGATGTGCACATTGACATGAATTACTGTACCCCTGGTGGGTTCAAAACGCTGGCTTCCAATTACCTTGGGATCACGGAGCACCCTCTTTTTGTTCAAATTGAGAACTTGCTTGGGATGATCGATGTCACTCCTGCGGAGGTAGGGGAGCAGTTTTTGCTGGACGAAAACCCAGATATTGCACTCAACAGCCTGATGGAGCTCCTTCTTGAGAAGAAACGAAATCACGAATTGCAGATAAAAGTACCTCTCACCGTTGAATGA 1374 0.5269 MMTPKFQKVVSTAASVAATVMLLRSFTRNYIPPEFQNYLHSKLSKLLSSFSTELTLVIDEFNGLTPNPLFAAAQLYLKPQEAPNTKRFRATMSSRSRHVSLLMDGNDEITDSFNGVPFRWRLVSRRGKSNFAVHFFEVRFHKKHREMVLSEYFPRVMKEAEAVRERRKTLRLFTVKDMRFRRGGRGRLWQGVNLEHPATFATVAMDWELKEMIVRDLDRFVERKGLYKSVGKAWKRGYLLSGPPGTGKSSLIAAMANYLNFDVYDLELTAVNGNSDLRRLLIATRNRSILVVEDIDCSLHLQDRLAKPKSSQPHRFIPRHFHSFPAPQVTLSGFLNFIDGLWSSCGNERIVVFTTNHKEKLDPALLRPGRMDVHIDMNYCTPGGFKTLASNYLGITEHPLFVQIENLLGMIDVTPAEVGEQFLLDENPDIALNSLMELLLEKKRNHELQIKVPLTVE 457
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu5g02363 457 SMART AAA_5 234 381 IPR003593 GO:0016887
Vimu5g02363 457 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 186 418 IPR027417 -
Vimu5g02363 457 ProSitePatterns AAA-protein family signature. 349 367 IPR003960 GO:0005524|GO:0016887
Vimu5g02363 457 CDD RecA-like_BCS1 213 377 - -
Vimu5g02363 457 Gene3D - 190 375 IPR027417 -
Vimu5g02363 457 PANTHER BCS1 AAA-TYPE ATPASE 11 445 - -
Vimu5g02363 457 Pfam Domain associated at C-terminal with AAA 31 123 IPR025753 -
Vimu5g02363 457 Pfam ATPase family associated with various cellular activities (AAA) 239 377 IPR003959 GO:0005524|GO:0016887
Vimu5g02363 457 Gene3D - 376 445 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu5g02363 Vimu-Chr5 34399984 34401458 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu5g02363 199 419 Miscellaneous Gene Families AT5G58870 29.258 3.30e-09 57.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu5g02363 K08900 - gmx:100789716 642.884