Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu5g02354 ATGGTGTCTGCTTGTGTGACCTTGAAAGCCAATACCCATTTCGTAAACTCGAGAAAAGACAATATTTTTCGTCAAGATGGTGGTTTTTTAGGTGAGAGACTCAAAGGGAGCCTTAATTACAGTCCCTGGATCATTAATCAATTGGCCTTAAGTTTGAGTACCCAGGAGAGGGTGAAGAAGGCCAAACCTGGTGTTGTTTCTGCTGTTCTTACGTCAAGTACTACCAAAGAATCAGTGGCTTTTCAAATGCCAGCGTTTCTCAGAAGAAAGGCTGACCCAAAAAATGTTGTTTCCATCATTCTGGGAGGGGGTCCTGGGATTCAACTATTTCCTCTCACCAAACGAGCTGCTACACCTGCTGTTCCTGTCGGAGGATGTTACAGGCTTATAGACATCCCAATGAGCAACTGCATCAACAGTGGCCTCAACAAAATATTTGTTCTGACCCAATTCAACTCTGCATCCCTCAACCGTCACATCTCCCGCACCTATTTTGGAAATGGAATCAACTTCGGCGATGGATGTGTGGAGGTTCTGGCCGCTACTCAAACTCCAGGAGAAGCTGGAAAGAAATGGTTCCAAGGAACCGCAGATGCTGTGAGGCAATTTACATGGGTATTTGAGGATGCCAAAAACACAAACATTGAGAATGTATTGATCTTGGCCGGAGATCATCTATACCGAATGGATTACATGGACCTTGTGCAGAGTCACGTTGACAGAAATGCAGATATTACAGTATCATGTGCTGCTGTAGGTGACAGCCGTGCATCAGATTATGGATTGATCAAGGTAGATGGCAGAGGTCGCATCATCCATTTTTCAGAAAAACCCAAGGGTCCTGATCTAAAAGCAATGCAAGCAGATACTTCTGTTTTCGGGTTGTTACCCCATGAGGCAAAAAAGTCACCATATATTGCATCTATGGGGGTTTATGTATTCAAGACGGATGTTTTACTCAAACTTTTGAAATGGAGATATCCTACAGCTAATGACTTCGGATCTGAAATCATTCCTGCAGCTGTGAGGGAACACAATGTCCAGGCGTATTTATACAATGACTATTGGGAAGACATTGGAACAATAAAATCATTTTACGATGCTAACTTGGCTCTTACTGAAGAGAATCCAATGTTCAAATTTTATGACCCCAAAACACCCATTTACACATCTCCAGGATTCCTACCACCCACAAAGATTGACAAATGCCGGATTGTGGATGCAATAATCTCCCATGGATGTTTCCTAAGGGAATGTATCGTTCAACATTCCATAGTGGGGGAACGTTCACGTTTGGATTATGGTGTTGAGCTCCAGGACACTGTAATGATGGGAGCTGACTATTACCAAACTGAATCAGAAATTGCTTCTCTGCTGGCAGAGGGGAAGGTTCCCATTGGGATTGGAAGGAATGCAAAAATTAGAAACTGCATAATTGACAAGAATGCAAAGATAGGGAAAGATGTCATCATCACAAACAAAGATGGAGTTCAAGAAGCAGATAGACCAGATGATGGATTTTACATTCGATCAGGAATCACAGTCATATTGGAGAAGGCAACAATAGAAGATGGCACTGTCATATAA 1587 0.426 MVSACVTLKANTHFVNSRKDNIFRQDGGFLGERLKGSLNYSPWIINQLALSLSTQERVKKAKPGVVSAVLTSSTTKESVAFQMPAFLRRKADPKNVVSIILGGGPGIQLFPLTKRAATPAVPVGGCYRLIDIPMSNCINSGLNKIFVLTQFNSASLNRHISRTYFGNGINFGDGCVEVLAATQTPGEAGKKWFQGTADAVRQFTWVFEDAKNTNIENVLILAGDHLYRMDYMDLVQSHVDRNADITVSCAAVGDSRASDYGLIKVDGRGRIIHFSEKPKGPDLKAMQADTSVFGLLPHEAKKSPYIASMGVYVFKTDVLLKLLKWRYPTANDFGSEIIPAAVREHNVQAYLYNDYWEDIGTIKSFYDANLALTEENPMFKFYDPKTPIYTSPGFLPPTKIDKCRIVDAIISHGCFLRECIVQHSIVGERSRLDYGVELQDTVMMGADYYQTESEIASLLAEGKVPIGIGRNAKIRNCIIDKNAKIGKDVIITNKDGVQEADRPDDGFYIRSGITVILEKATIEDGTVI 528
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu5g02354 528 CDD ADP_Glucose_PP 99 359 - -
Vimu5g02354 528 FunFam Glucose-1-phosphate adenylyltransferase 78 393 - -
Vimu5g02354 528 Pfam Nucleotidyl transferase 98 374 IPR005835 GO:0009058
Vimu5g02354 528 ProSitePatterns ADP-glucose pyrophosphorylase signature 3. 307 317 IPR005836 GO:0005978|GO:0008878
Vimu5g02354 528 PANTHER GLUCOSE-1-PHOSPHATE ADENYLYLTRANSFERASE-RELATED 50 528 IPR011831 GO:0005978|GO:0008878
Vimu5g02354 528 ProSitePatterns ADP-glucose pyrophosphorylase signature 2. 192 200 IPR005836 GO:0005978|GO:0008878
Vimu5g02354 528 Gene3D Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A 82 393 IPR029044 -
Vimu5g02354 528 CDD LbH_G1P_AT_C 396 522 - -
Vimu5g02354 528 FunFam Glucose-1-phosphate adenylyltransferase 394 528 - -
Vimu5g02354 528 SUPERFAMILY Trimeric LpxA-like enzymes 391 528 IPR011004 -
Vimu5g02354 528 Gene3D Hexapeptide repeat proteins 394 528 - -
Vimu5g02354 528 NCBIfam glucose-1-phosphate adenylyltransferase 96 493 IPR011831 GO:0005978|GO:0008878
Vimu5g02354 528 SUPERFAMILY Nucleotide-diphospho-sugar transferases 94 489 IPR029044 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu5g02354 Vimu-Chr5 34349265 34355143 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu5g02354 K00975 - gmx:100808791 1001.89
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu5g02354 5 34349265 34355143 Vimu5g02354 5 34349265 34355143 ECH