Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu5g02348 ATGGGGAAAGCGAAGGGGAAGCACCGTTTGGATAAGTACTATCACTTGGCCAAAGAACATGGTTACAGGTCTCGAGCTTCATGGAAGCTGGTCCAGCTCAATTCCAAATACCAGTTCCTCGAGTCCGCACGCGCCGTCCTCGACCTCTGCGCCGCCCCCGGAGGCTGGATGCAGGTGGCGGTGCAGCGCGTCCCCGTAGACCACCTCGTCATCGGCGTGGACCTGGCGCCCATCGCCCCCATCCGCGGTGCAATCGCCATCCAGGAAGACATCACGAAAACAGAATGCAAGTCCCGCATCAAGAAGCTCATGAATCAGCACGGATGCCGCGCCTTTGACGTCATTCTGCACGACGGCTCTCCTAATGTCGGCGGAGCCTGGGCTCAGGAAGCCATGAGCCAGAACGCCCTCGTCATTGATGCTGTCAAATTAGCCACTCAGTTCTTAGCGCCCAAGGGTATCTTTGTCACCAAAATTTTCAGGTCGCAAGATTACAGCTCTGTGGTGTATTGCTTGAAGCAGTTGTTTGAGAAGGTTGAGGTGGATAAACCTGCGGCTAGTCGATCTGAATCTGCTGAGATATATGTTTTGGGGCTTAGGTACAAGGCACCTGCCAAGATTGATCCGCGACTTCTTGATGTGAAGCATCTTTTTCAGGGGTCTGTGGAACCGCAGCCTAAGGTGGTGGATGTACTTAGAGATACTAAGCAGAAAAGGCATCGTGACGGCTATGAAGATGGAAACACAACTTTAAGGAAGATATCTTCAGCTTCAAATTTCATTTGGTCAGATTCTCCTCTGGAGATCCTTGGTTCAGTCACTTCTATAACCTTTACTGATGCAGCTGATAAACCAATCAAGGATCATGATGTAACAACTGAAGAGGTCAAATCTCTATGCGATGATTTAAGGGTTTTGGGGAAGCAAGATTTCAAGCATCTTCTAAAGTGGAGGATTCACATTAGGAAAGCTCTTTCACCAACTCAGAAGCATGATCCTCCTACCACTAAAGAAGAGACGGAAAATGAGCCCAAGGTGGACGAAGAAGATAGATTACTCAACGAAATGGAGGAACTGACTAATGTGATGGACCGCAAGAAGAAACGTGCAAAGAAGCTTCTTGCTAAAAGAAGAGCCAAGGACAAGGCACGGAAAGCAACAGGGATGCAAATGGATGCAGTAGAAGATGGTTATGTAGATCACGAGCTGTTTTCCCTTTCCTCTATAAAGGGAAAGAAAGATCTGGTAGCTGTTGACAACACCGAGTATGAAGGTGACGAGGGTGAAGTTGAAGATAGTGAGAATGAAGAAATCCATGAAAGCCCAGAGCATTCATCCAGTGACTTGGAAGATTCTGATGAGGAACGGAAAAGATACAATGAACAAATGGAAGATTTGTTGGATAAAGCTTATGAGAAGTTTGTCATCAGAAAGGAAGGAAGTGCAAAGCAGCGTAAGCGAATTAAGAAATCCTATGAGGCAGAGGCCCAACTTTTGGAGGGCGGTGAGGATGATGATATTGTTGAATCCAAGTATGATTCCGATGAAGACAAGGGTGATCAAGAAGCAAATCCATTGATGGTGCCACTTAATGACGGAGCAGAACCGACCCAAGAGGAGATCATGAAAAAGTGGTTTAGTCAGGATATATTTGCTGAAGCTGCAGAGGAAGGTGACTTTGAGAAAGATGAGAGTAAAGATGAAATGGATATAGATGATGAGCCTAGGGAGAAGACATCCGTTGCCAAAAAGGTCAAAGAAAATAAAACAGCAGCTCCAGCAGTGGTAGATCACCCTCAACCTCAAGCATCCAAGACAGTAGATGATTTTGAAATAGTTCCTGCGCCTGGCACTGATTCAAGTGATGATTCATCCTCTGATGAATCGGAGGAAGATGTTGAAACCAAAGCTGAGATACTGGCTTATGCAAAGAAGATGATGAGAAAAAAGCAACGGGAGCAGATATTGGATGATGCATATAACAAGTACATGTTTGATGACGAGGGATTGCCCAAGTGGTTTCTAGATGAAGAGAAGAAACACCGGCAACCAGTAAAGCCTCTTACGAAAGAGGAAATTGCTGCAATGAGAGCGCAATTTAAAGAAATTGATGCCCGGCCTGCAAAGAAGGTGGCGGAGGCCAAAGCACGGAAGAAGCGTGCTGCAATGAAGAAGCTTGAGAAGGTACGGAAGAAGGCGAATGCCATATCAGATCAGACAGAGATTTCTGATCGTTCGAAGAGGAAGCAAATTGAACAACTGTATAAAAAGGCTGTTCCGAAGAGGCCCAAAAAGGAATATGTAGTTGCAAAGAAAGGTGTGCAAGTAAAGACTGGCAAAGGAAAAGTCCTTGTTGATCGAAGAATGAAGAAGGATGCTAGGAAACATGGAATGGGTAAGGCAGGAAAAGGAGGTTCTAAGGGGAAGAAGGGTAAGGCTTCAAAGGGCAAAGGAGCTTCGAAGGCCTCCTCTGCCAAAAAGGGAAAACAGAGGACTAAATGA 2502 0.4608 MGKAKGKHRLDKYYHLAKEHGYRSRASWKLVQLNSKYQFLESARAVLDLCAAPGGWMQVAVQRVPVDHLVIGVDLAPIAPIRGAIAIQEDITKTECKSRIKKLMNQHGCRAFDVILHDGSPNVGGAWAQEAMSQNALVIDAVKLATQFLAPKGIFVTKIFRSQDYSSVVYCLKQLFEKVEVDKPAASRSESAEIYVLGLRYKAPAKIDPRLLDVKHLFQGSVEPQPKVVDVLRDTKQKRHRDGYEDGNTTLRKISSASNFIWSDSPLEILGSVTSITFTDAADKPIKDHDVTTEEVKSLCDDLRVLGKQDFKHLLKWRIHIRKALSPTQKHDPPTTKEETENEPKVDEEDRLLNEMEELTNVMDRKKKRAKKLLAKRRAKDKARKATGMQMDAVEDGYVDHELFSLSSIKGKKDLVAVDNTEYEGDEGEVEDSENEEIHESPEHSSSDLEDSDEERKRYNEQMEDLLDKAYEKFVIRKEGSAKQRKRIKKSYEAEAQLLEGGEDDDIVESKYDSDEDKGDQEANPLMVPLNDGAEPTQEEIMKKWFSQDIFAEAAEEGDFEKDESKDEMDIDDEPREKTSVAKKVKENKTAAPAVVDHPQPQASKTVDDFEIVPAPGTDSSDDSSSDESEEDVETKAEILAYAKKMMRKKQREQILDDAYNKYMFDDEGLPKWFLDEEKKHRQPVKPLTKEEIAAMRAQFKEIDARPAKKVAEAKARKKRAAMKKLEKVRKKANAISDQTEISDRSKRKQIEQLYKKAVPKRPKKEYVVAKKGVQVKTGKGKVLVDRRMKKDARKHGMGKAGKGGSKGKKGKASKGKGASKASSAKKGKQRTK 833
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu5g02348 833 Coils Coil 709 739 - -
Vimu5g02348 833 Hamap AdoMet-dependent rRNA methyltransferase <gene_name> [SPB1]. 1 803 IPR028589 GO:0008649|GO:0031167
Vimu5g02348 833 MobiDBLite consensus disorder prediction 722 749 - -
Vimu5g02348 833 Pfam FtsJ-like methyltransferase 22 200 IPR002877 GO:0008168|GO:0032259
Vimu5g02348 833 MobiDBLite consensus disorder prediction 437 462 - -
Vimu5g02348 833 Pfam Spb1 C-terminal domain 606 797 IPR012920 GO:0005634|GO:0006364|GO:0008168
Vimu5g02348 833 SUPERFAMILY S-adenosyl-L-methionine-dependent methyltransferases 21 202 IPR029063 -
Vimu5g02348 833 FunFam AdoMet-dependent rRNA methyltransferase SPB1 19 208 - -
Vimu5g02348 833 MobiDBLite consensus disorder prediction 770 833 - -
Vimu5g02348 833 Coils Coil 349 376 - -
Vimu5g02348 833 Gene3D Vaccinia Virus protein VP39 19 208 IPR029063 -
Vimu5g02348 833 MobiDBLite consensus disorder prediction 793 833 - -
Vimu5g02348 833 MobiDBLite consensus disorder prediction 332 348 - -
Vimu5g02348 833 MobiDBLite consensus disorder prediction 494 635 - -
Vimu5g02348 833 Coils Coil 449 469 - -
Vimu5g02348 833 MobiDBLite consensus disorder prediction 554 568 - -
Vimu5g02348 833 PANTHER RIBOSOMAL RNA METHYLTRANSFERASE 5 287 - -
Vimu5g02348 833 MobiDBLite consensus disorder prediction 423 462 - -
Vimu5g02348 833 Pfam Domain of unknown function (DUF3381) 235 384 IPR024576 -
Vimu5g02348 833 MobiDBLite consensus disorder prediction 569 585 - -
Vimu5g02348 833 MobiDBLite consensus disorder prediction 728 749 - -
Vimu5g02348 833 MobiDBLite consensus disorder prediction 325 348 - -
Vimu5g02348 833 Hamap Ribosomal RNA large subunit methyltransferase E [rlmE]. 6 202 IPR015507 GO:0001510|GO:0008168
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu5g02348 K14857 - gmx:100790741 1310.05
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu5g02348 5 34315576 34320375 Vimu5g02348 5 34315576 34320375 ECH