Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu5g02342 ATGGCTGCAGCCGATGTTGAGTTCAGATGTTTCATCGGTGGTCTTGCATGGGCCACCGACAATGATTCCTTGGAGAAAGCCTTCTCTGTATACGGCGAAGTCCTTGAATCGAAGGTCTGTTTGTCGCAGGCACCGCATCTGACACGATTCGGATTCGGAATTTGTCGATCCCGTTCTGATCTGTACGTTCATCTTCATCCTTTAATCAAAGGCGAAGATCGATCGGGTTCTATTCGATCTGATTTTCCATTGCGTTTCGTTTTGCAGATTATCAATGATCGTGAGACTGGAAGGTCTAGGGGTTTTGGATTCGTGACTTTCTCTACGGAGCAGGCCATGAGAGACGCGATCCAAGGAATGAACGGTCAGAACCTTGACGGTCGTAATATCACCGTGAACGAAGCTCAGTCTCGTGGTTCTGGCGGAGGGGGCGGCGGTGGCCGTGGTGGTGGCGGATATGGAGGTGGTGGTGGTGGATACAATCGTGGTGGAGGAGGTGGATACGGAGGTGGTGGAGGATATGGTGGCGGCGGTGGATACGGTGGCCGACGTGAAGGAGGGTACAGTCGTAATAGCGGTGGTTATGGTGGAGGAGGTGGTTATGGCGGTGGTAGAGATCGTAGTTATGGTGACAGTGGATCCCGCTCTCGTGGTGGTGATGGAGGAGACGGTAGCTGGAACTAG 684 0.5292 MAAADVEFRCFIGGLAWATDNDSLEKAFSVYGEVLESKVCLSQAPHLTRFGFGICRSRSDLYVHLHPLIKGEDRSGSIRSDFPLRFVLQIINDRETGRSRGFGFVTFSTEQAMRDAIQGMNGQNLDGRNITVNEAQSRGSGGGGGGGRGGGGYGGGGGGYNRGGGGGYGGGGGYGGGGGYGGRREGGYSRNSGGYGGGGGYGGGRDRSYGDSGSRSRGGDGGDGSWN 227
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu5g02342 227 CDD RRM2_NsCP33_like 9 135 - -
Vimu5g02342 227 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 89 130 IPR000504 GO:0003723
Vimu5g02342 227 MobiDBLite consensus disorder prediction 171 227 - -
Vimu5g02342 227 Gene3D - 2 170 IPR012677 -
Vimu5g02342 227 SMART rrm1_1 9 133 IPR000504 GO:0003723
Vimu5g02342 227 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 8 137 IPR000504 GO:0003723
Vimu5g02342 227 SUPERFAMILY RNA-binding domain, RBD 88 184 IPR035979 GO:0003676
Vimu5g02342 227 SUPERFAMILY RNA-binding domain, RBD 8 52 IPR035979 GO:0003676
Vimu5g02342 227 PANTHER GEO13361P1-RELATED 4 210 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu5g02342 Vimu-Chr5 34275201 34275987 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu5g02342 - K13195 ccaj:109800369 135.576
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu5g02342 5 34275201 34275987 Vimu5g02342 5 34275201 34275987 ECH