Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu5g02340 ATGCAACAAAGTAAAAGAAGTTGTCAGGATGAGCACAAAGAAGACAGAGGTAATTACCACACTAGGTACCCATCTGACATGAATACTATCACTAAAGAGGAACGCGTAGTGTACTTAAGAAGATGCATAGAAGTAGTACCTCGAGAAAGCAAGCTCCAGCAGGAGGAATCGAAGGCGATATTGGACGTGAGCCTAGCAGGCATCAACGACTCAACGCTTCTCACAACCGACAAAACCCTATCAAACACGAAATTCATCCACAATGACAACCGTAAAAGGCAATGCAGCACGCTGTACCTTAAAGCTCGAGGGATGCGTGTTAAGGAAGACGAAGAAAACACAAACGGCGTCGTTGAGCTCTGGACGAAGATTCTGGAACGATTAGCGAAGGATCTTGACGCGACCCTTACCGCGGAAGCCATAATGCTAGAACCCCCGCCGTACGAAACCTATCTCTCTTATTCCGATTTTATTTCTAAACGCAGTGTGGTGTGGTGTGGTGTGCGGCGAAGCAAGAGTGTGAGAATGGCGGAAGAAGCAGTTCTGGGCTATCTAGAGAAGAACGAGGAAATTACAGACTCGGGTGAGTTCGCAGCTGAACGCGGCATTGACCATAACGAGATCGTGAACGTGATTAAGAGCCTGCACGGTTTTAGATACGTGGATGCGCAAGACATTAAGAGAGAGGCATGGGTGCTAACTGATGAGGGTAAAACCTATGCCACTGTGGGATCACCGGAAGTTCAACTCTTTCTGGCCATTCCCCCGGAGGGTATCTCTAAAGAAGACCTTCAGAAAAAGTTGGATCCTTCGCTCTTCAAGATAGGTTGTGCCCAGGCTGCAAAGAACAAATGGGTGGATATGGGAAAACAATTGATATCTAGAAAGGTTCAACATGTGGATGACAAGGTCAAAGATCTTCTTATTCAAATACAACAAGGGCGGAACATTGGTTCAGATGAGATCAAAGCACTCAAAGCAAGAAAGCTCATTGTCCCACAAACGTGGAAGGGTTACTCCTTGAAAAAAGGTCCAAATTATGCGTCCAAAAGAAAGAAGGTCGTCACCGACCTGACTCGTGATAATTTTCAGAGTGGTGAGTGGAAGGAACTAGAGTTCAAGGAGTACAATTATAGTGCAAAAGGTCAGCCTCTTGAGGGTGGCAATCTTCATCCATTGCTGAAGGCAAGGAGATATACCCTCTTCTGGAACTTCGATGCCCTGTTCCAGCCCCAACAACACCCAGCTCGTGATTCACATGATACGTTCTTTTTGGAAACTCCTTCAACAACAAAGGAATTGCCAGAAGATTATGTTCTGAGAGTGAAGCAAGTTCATGAATCTGGTGGTTATGGGTCAAGAGGATATACATATGACTGGAAGAGAGAGGAAGCAAATAAAAACCTCCTGCGAACCCATACAACTGCTGTTTCCTCCAGGATGCTTTACCAACTAGCACAGAAACCATTTGCCCCCAAAAAATATTTCTCTATCGATCGTGTATTTAGAAATGAAGCAGTTGATCGGACACATCTTGCGGAATTCCACCAAATAGAAGGCATGACCAAACTGAAGTTCAAACCAGCTTACAATCCATACACTGAACCTAGCATGGAGATCTTTAGTTATCATGAAGGTTTTAAAAAATGGGTAGAGGTGGGAAACTCCGGCATGTTCAGACCTGAAATGTTGCAGCCGATGGGACTTCCTGAAGATGTCCAAGTTATTGCGTGGGGGCTTTCCCTTGAAAGGCCAACGATGATACTATACGGGATCGATAACATCAGAGATCTCTTCGGACACAAGGTGGATCTTGGGCTCATAAAGAAAAATCCTATATGTCGTCTTGGAATTGATTAA 1860 0.4489 MQQSKRSCQDEHKEDRGNYHTRYPSDMNTITKEERVVYLRRCIEVVPRESKLQQEESKAILDVSLAGINDSTLLTTDKTLSNTKFIHNDNRKRQCSTLYLKARGMRVKEDEENTNGVVELWTKILERLAKDLDATLTAEAIMLEPPPYETYLSYSDFISKRSVVWCGVRRSKSVRMAEEAVLGYLEKNEEITDSGEFAAERGIDHNEIVNVIKSLHGFRYVDAQDIKREAWVLTDEGKTYATVGSPEVQLFLAIPPEGISKEDLQKKLDPSLFKIGCAQAAKNKWVDMGKQLISRKVQHVDDKVKDLLIQIQQGRNIGSDEIKALKARKLIVPQTWKGYSLKKGPNYASKRKKVVTDLTRDNFQSGEWKELEFKEYNYSAKGQPLEGGNLHPLLKARRYTLFWNFDALFQPQQHPARDSHDTFFLETPSTTKELPEDYVLRVKQVHESGGYGSRGYTYDWKREEANKNLLRTHTTAVSSRMLYQLAQKPFAPKKYFSIDRVFRNEAVDRTHLAEFHQIEGMTKLKFKPAYNPYTEPSMEIFSYHEGFKKWVEVGNSGMFRPEMLQPMGLPEDVQVIAWGLSLERPTMILYGIDNIRDLFGHKVDLGLIKKNPICRLGID 619
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu5g02340 619 Gene3D Bira Bifunctional Protein; Domain 2 398 521 IPR045864 -
Vimu5g02340 619 Gene3D - 233 331 - -
Vimu5g02340 619 CDD PheRS_alpha_core 391 604 - -
Vimu5g02340 619 Pfam PheRS DNA binding domain 1 178 226 IPR040724 -
Vimu5g02340 619 Gene3D Bira Bifunctional Protein; Domain 2 522 619 IPR045864 -
Vimu5g02340 619 Gene3D - 246 300 - -
Vimu5g02340 619 FunFam Phenylalanine--tRNA ligase alpha subunit, cytoplasmic 246 300 - -
Vimu5g02340 619 Gene3D - 182 374 - -
Vimu5g02340 619 SUPERFAMILY Class II aaRS and biotin synthetases 380 604 IPR045864 -
Vimu5g02340 619 ProSiteProfiles Aminoacyl-transfer RNA synthetases class-II family profile. 108 612 IPR006195 -
Vimu5g02340 619 Pfam PheRS DNA binding domain 3 245 300 IPR040725 -
Vimu5g02340 619 MobiDBLite consensus disorder prediction 1 25 - -
Vimu5g02340 619 Pfam tRNA synthetases class II core domain (F) 522 605 IPR002319 GO:0000049|GO:0004812|GO:0005524|GO:0043039
Vimu5g02340 619 Pfam tRNA synthetases class II core domain (F) 402 521 IPR002319 GO:0000049|GO:0004812|GO:0005524|GO:0043039
Vimu5g02340 619 PANTHER PHENYLALANYL-TRNA SYNTHETASE 402 521 - -
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu5g02340 K01889 - gmx:100777795 838.18
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu5g02340 5 34255116 34261567 Vimu5g02340 5 34255116 34261567 ECH