Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu5g02334 ATGTTGCCTTTCATAAGAACATATTCTCGAACTACCATGGCTACACATTCCAACTCTTCATTCCTCCTCCACCTTTCCTTCATCATCAATGCAGTCTACATTACTGTTTCACAACCCTTCATCGGCGTCAACTATGGCCAGGTCGCCGACAATCTTCCAGCGCCCGAGGCATCGGCGGAGCTTCTCAAGTCTACGACGGTCGGGAAAGTACGTCTTTACGGCGCGGATCCTGCAATCATAAAGGCGCTAGCGAACTCCGGCATTGGAATCGTCATCGGCGTGGCCAACGGCGACATTCCGAGTTTGGCGTCTGATCCCGACTCGGCGACTCGGTGGGTCAACGCGAACGTGTTGCCACATTACCCCGAAAGCAACATTACTATGATCACTGTCGGCAACGAGATCATGAGCTCCGGCGAAGATGGCCTCGTCTCGCAGCTACTCCCGGCGATGCAAAATGTCCAGAACGCCCTCAACTCGGCCTCACTCGGTGGCAAAATAAAAGTTTCCACGGTGCATTCTATGGCCGTGTTGACTCAGTCGGAGCCTCCCTCGGCCGGGTCGTTCGACCCAGATTTGATGGATATCCTCCAACCGTTGGTAGCGTTTTTGAAGAATAACGAGTCACCTTTCGCCATCAACCCATACCCGTTCTTCGCTTACCAGAGTGACCCGAGACCCGAAACACTCGCATTCTGTCTATTTCGACCGAATTCGGGTCGGGTCGATCAGATTAGCGGGAAAGTTTATTACAACATGTTTGACGCCCAGGTGGATGGTGTGCAGAGTGCATTAAGAAGGATGGGGTTTGAGGAGATGGAGATTGTGATTGCTGAGACAGGATGGCCCTCTCGTGGGGACAAGGATGAAGCAGGAGCTACTGTTGAAAACGCCAGGGCCTACAATGGAAACCTCATTGCACACCTTAGATCAATGGTTGGCACTCCTTCCATGCCTGCCAAATCTGTGGACACATTCATCTTTGCACTCTATGATGAGGATCTCAAACCTGGTCCACCCTCTGAAAGAGCATTTGGCCTCTTCAAAACTGATCTCACCATGGCGTATGATGTTGGCCTACACAACTCTGCCTCAACACATAAGAATCCACCTACTAATCCTGTTACTCCAGAAAGGGAAAGACAATGGTGCATACCAAAAATGGAAGTGAGTGAGGCTGAGTTGCAGAGAAATATTGATTATATCTGTGGTAGCCAAGTTATAGATTGTGGACCAATTCAGTCAGGAGGTGCTTGTTATGAACCAAACACGGTCTTATCTCATGCTGCCTTTGCTATGAATCTCTATTACCAGAACTTTGGAAGAAATCCATGGAACTGTGATTTCTCTCAAACTGCGATGCTTACTTCTCAAAATCCAAGTTACAGTGATTGTGTTTATCCTGGTGGAAGTATCTGA 1419 0.4905 MLPFIRTYSRTTMATHSNSSFLLHLSFIINAVYITVSQPFIGVNYGQVADNLPAPEASAELLKSTTVGKVRLYGADPAIIKALANSGIGIVIGVANGDIPSLASDPDSATRWVNANVLPHYPESNITMITVGNEIMSSGEDGLVSQLLPAMQNVQNALNSASLGGKIKVSTVHSMAVLTQSEPPSAGSFDPDLMDILQPLVAFLKNNESPFAINPYPFFAYQSDPRPETLAFCLFRPNSGRVDQISGKVYYNMFDAQVDGVQSALRRMGFEEMEIVIAETGWPSRGDKDEAGATVENARAYNGNLIAHLRSMVGTPSMPAKSVDTFIFALYDEDLKPGPPSERAFGLFKTDLTMAYDVGLHNSASTHKNPPTNPVTPERERQWCIPKMEVSEAELQRNIDYICGSQVIDCGPIQSGGACYEPNTVLSHAAFAMNLYYQNFGRNPWNCDFSQTAMLTSQNPSYSDCVYPGGSI 472
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu5g02334 472 Pfam X8 domain 382 454 IPR012946 -
Vimu5g02334 472 ProSitePatterns Glycosyl hydrolases family 17 signature. 273 286 IPR000490 GO:0004553|GO:0005975
Vimu5g02334 472 PANTHER GLUCAN ENDO-1,3-BETA-GLUCOSIDASE BG1-RELATED-RELATED 32 456 IPR044965 GO:0004553|GO:0005975
Vimu5g02334 472 FunFam glucan endo-1,3-beta-glucosidase 7 378 468 - -
Vimu5g02334 472 SUPERFAMILY (Trans)glycosidases 41 358 IPR017853 -
Vimu5g02334 472 Gene3D Glycosidases 40 368 - -
Vimu5g02334 472 Pfam Glycosyl hydrolases family 17 41 358 IPR000490 GO:0004553|GO:0005975
Vimu5g02334 472 Gene3D - 379 467 - -
Vimu5g02334 472 SMART X8_cls 382 467 IPR012946 -
Vimu5g02334 472 FunFam Glucan endo-1,3-beta-glucosidase 14 39 366 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu5g02334 Vimu-Chr5 34223512 34226598 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu5g02334 37 468 Miscellaneous Gene Families AT2G16230 63.364 0.0 578
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu5g02334 - - gmx:100778892 675.241
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu5g02334 5 34223512 34226598 Vimu5g02334 5 34223512 34226598 ECH