Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu5g02333 ATGTCTGTTGCGGAGCTCAAAGAGCGTCACTCCGCTGCCATCGACACCGTCAACAATCTCAGGCACCAATTGAAGCAGAAGCGTCTTTCTTTGCTCGACACAGATATCTGTGAGTATGCGAGGTCTCAGGGTAGAACACCTGTGACCTTTGGACCTACGGATCTGGTTTGCTGTAGAACCTTGCAGGGTCACACGGGAAAGGTGTATTCTTTGGATTGGACTTCTGAAAAAAGTCAGATTGTTAGTGCATCTCAAGATGGACGATTAATAGTGTGGAATGCCCTAACTAGGCAGAAAATCCATGCCATAAAGCTGCCTTGTGCATGGGTCATGACATGTGCTTTTTCACCAACTGGTCAGTCTGTTGCATGTGGTGGTCTTGACAGTGTGTGTTCTATTTTCCATCTTAATTCACCCACTGACAAAGATGGAAATCTACCTGTTTCCCGGATGCTTAGTGGACATAAGGGTTATGTTTCCTCTTGTCAGTATGTTCCAGATGAAGATACTCATTTAATTACTGGTTCTGGTGATCAGACATGTGTTTTATGGGATATAACTACTGGCCTTAAAACATCTGTCTTTGGAGGAGAGTTCCAGTCTGGACACACTGCAGATGTATACAGGTGA 630 0.4476 MSVAELKERHSAAIDTVNNLRHQLKQKRLSLLDTDICEYARSQGRTPVTFGPTDLVCCRTLQGHTGKVYSLDWTSEKSQIVSASQDGRLIVWNALTRQKIHAIKLPCAWVMTCAFSPTGQSVACGGLDSVCSIFHLNSPTDKDGNLPVSRMLSGHKGYVSSCQYVPDEDTHLITGSGDQTCVLWDITTGLKTSVFGGEFQSGHTADVYR 209
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu5g02333 209 Gene3D - 3 209 IPR015943 GO:0005515
Vimu5g02333 209 PANTHER GUANINE NUCLEOTIDE-BINDING PROTEIN BETA G PROTEIN BETA 4 207 IPR016346 GO:0007165
Vimu5g02333 209 PRINTS Beta G protein (transducin) signature 99 114 IPR001632 -
Vimu5g02333 209 PRINTS Beta G protein (transducin) signature 61 77 IPR001632 -
Vimu5g02333 209 PRINTS Beta G protein (transducin) signature 80 94 IPR001632 -
Vimu5g02333 209 PRINTS Beta G protein (transducin) signature 117 134 IPR001632 -
Vimu5g02333 209 SUPERFAMILY WD40 repeat-like 53 208 IPR036322 GO:0005515
Vimu5g02333 209 Coils Coil 3 23 - -
Vimu5g02333 209 ProSitePatterns Trp-Asp (WD) repeats signature. 172 186 IPR019775 -
Vimu5g02333 209 SMART WD40_4 96 135 IPR001680 GO:0005515
Vimu5g02333 209 SMART WD40_4 145 185 IPR001680 GO:0005515
Vimu5g02333 209 SMART WD40_4 54 93 IPR001680 GO:0005515
Vimu5g02333 209 ProSiteProfiles Trp-Asp (WD) repeats profile. 152 194 IPR001680 GO:0005515
Vimu5g02333 209 Pfam WD domain, G-beta repeat 57 93 IPR001680 GO:0005515
Vimu5g02333 209 Pfam WD domain, G-beta repeat 150 185 IPR001680 GO:0005515
Vimu5g02333 209 ProSiteProfiles Trp-Asp (WD) repeats profile. 61 102 IPR001680 GO:0005515
Vimu5g02333 209 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 61 93 - -
Vimu5g02333 209 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 152 189 - -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu5g02333 57 188 Miscellaneous Gene Families AT5G08390 29.545 3.31e-09 54.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu5g02333 K04536 - gmx:100794776 416.387
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu5g02333 5 34219514 34220920 Vimu5g02333 5 34219514 34220920 ECH