Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu5g02331 CCTCTCGTGAAGAAGGATGATGACCGCGACGACGAAGGTGGTTATTTCATTCTTCTGCTGTTCTATCTCGCAATTCGATCTGCTCTTTATCATGATGGTTGGATTGGATTTGAACTCCGACTCATCTCTCATATGTCTTTTGACTATTTAACAGCTGAGTATTCTCCCTTTGCGGGAATTGAAAAGGGAGCTGTTCTTCAGGAGGCCAGGGTTTTTAATGACCCACAACTTGATGCCAGGAGATGTTCGCAGGTTATCACGAAACTTTTATACCTACTAAACCAAGGAGATACATTTACAAAGGTAGAAGCCACAGAAGTTTTCTTTGCTGTGACTAAGCTTTTTCAGTCTCGAGATCTTGGGTTAAGGAGAATGGTCTACCTGATAATAAAGGAACTTTCCCCCTCTGCGGATGAGGTTATTATCGTTACAAGCTCCCTCATGAAGGACATGATTAGTAAGACTGATATGTACAGGGCTAATTCTATTCGTGTCCTTTGTCGCATCACAGATGGAACACTCCTCACCCAAATAGAGCGATATCTGAAACAAGGAATTGTAGATAAGAATCCGGTTGTTGCAAGTGCAGCCTTAGTTAGCGGCATTCATCTGCTTCAGACGTCTCCAGAGATTGTAAAAAGGTGGAGCAATGAGGTTCAGGAAGCAGTTCAATCAAGGGCAGCTCTTGTGCAATTTCATGCACTGGCTTTGCTCCATCAGATACGGCAGAATGATCGACTAGCTGTTAGCAAACTGGTTAGCAGCTTGACCAGGGGGAATGTTCGTTCTCCTTTGGCCCAATGCCTTTTGATTCGCTATACAAGTCAGGTAATTCGGGAGTCAGGAAATATCACACAATCAGGAGATCGCCCCTTCTATGATTATCTTGAAAGTTGCCTTCGTCACAAGTCAGAGATGGTGATTTTTGAAGCAGCCAGGGCAATTACAGAGCTCAATGGAGTAACTAGCCGAGAATTAACTCCTGCAATCACAGTTCTTCAGCTCTTCTTAAGTTCGTCTAAGCCAGTCTTGAGATTTGCTGCTGTCCGCACCTTAAACAAGGTGGCAATGACACATGCAATGGCAGTGACTAACTGCAATATTGACATGGAAAGTTTAATCTCTGATCAGAACAGAAGCATTGCAACACTTGCCATCACTACTCTATTGAAAACAGGAAATGAATCTAGTGTGGACCGGCTTATGAAGCAGATTACAAATTTCATGTCTGATATTGCTGACGAGTTCAAAATTGTTGTTGTTGAAGCAATAAGATCACTGTGCTTAAAATTCCCTTTAAAATATAGATCTCTGATGAATTTCCTAAGTAATATTCTTAGGGAAGAAGGTGGTTTTGATTACAAGAAAGCAATTGTAGATTCAATTGTGATTCTTATCAGAGATATCCCTGAGGCCAAGGAAAGTGGGTTGCTTCATCTTTGTGAGTTTATTGAAGATTGTGAATTCACTTATTTGTCCACACAGATTCTGCACTTCCTGGGAGTTGAAGGACCAAAAACATCCGACCCCAGCAAATATATTCGTTATATATACAATAGAGTACATCTTGAGAATGCGACTGTTAGGGCCAGTGCTGTTAGCACAATGGCAAAGTTTGGGGCTTCTGTTGATGCATTAAAGCCTCGCATATTTGTACTGCTAAGGCGATGTCTTTTTGACAGTGATGATGAGGTCCGTGACAGAGCAACTCTTTATTTGAACACCCTTGGAGGTGATGGCAGAGTGGTTGAGACAGATGAAGATGTGAAAGATTTCCTCTTCGGGCAATTTGATATCCCGCTTGCCAATCTGGAGACTAGTTTGAAAAACTATGAGCCTTCAGAAGAGGCTTTTGACATTGGTTCGGTGCCCAGGGAGGTTAAATCTCAACCTCTTGCAGAGAAGAAGGCCTCTGGTAAAAAGCCTACCGGTTTGGGTGCTCCTCCTCGCGGTCCCCCATCTACTACAGATTCCTATGAAAGGTTGCTTCTATCCATTCCCGAATTTGCAAACTTTGGGAAACTTTTTAAGTCTTCAGAACCTGTGGAGCTTACTGAGGCGGAGACAGAATATGCAGTTAATGTTGTTAAACACATTTTTGATAGGCATGTCGTGTTTCAATACAACTGCACAAACACGATACCAGAACAATTATTGGAAGATGTTATTGTAATTGTGGATGCATCCGAAGCAGAAGAGTTCTCTGATGTGTGCTCAAAACCTCTTAGATCTCTTCCTTATGATTCACCTGGCCAGACATTTGTGGCTTTTGAGAAGCCTGAGGGATTACCAGTTGCTGGAAAGTTTTCTAATGTTCTGAAATTTATTGTTAAAGAGGTTGACCCAGCCACTGGTGAGGCAGAAGATGATGGTGTAGAGGATGAATACCAGCTAGAGGATTTGGAGGTTGTTACAGCAGACTACATATTGAAAGTGGGGGTGTCTAATTTCCGGAGTGCATGGGAAAGCATGGGCCCTGAAAATGAGCGAGTGGACGAATATGGTCTTGGTCCCAGGGAGAGTTTGGCTGAAGCTGTAAATACTGTCATCAATCTTCTTGGTATGCAGCCTTGTGAGGGAACCGAGGTAGTGCCGCCCAATTCAAGGTCACACACATGCTTGTTGTCAGGTGTATTCATAGGGAATGTGAAGGTGCTTGTACGGTTGTCTTTTGGACTTGATGGTCCGAAGGATGTTGCGATGAAACTGTCTGTCAGATCCGAGGATGAAACTGTCAGCGACACCATCCATGAGATTGTGGCTAGCGGCTAG 2772 0.4318 PLVKKDDDRDDEGGYFILLLFYLAIRSALYHDGWIGFELRLISHMSFDYLTAEYSPFAGIEKGAVLQEARVFNDPQLDARRCSQVITKLLYLLNQGDTFTKVEATEVFFAVTKLFQSRDLGLRRMVYLIIKELSPSADEVIIVTSSLMKDMISKTDMYRANSIRVLCRITDGTLLTQIERYLKQGIVDKNPVVASAALVSGIHLLQTSPEIVKRWSNEVQEAVQSRAALVQFHALALLHQIRQNDRLAVSKLVSSLTRGNVRSPLAQCLLIRYTSQVIRESGNITQSGDRPFYDYLESCLRHKSEMVIFEAARAITELNGVTSRELTPAITVLQLFLSSSKPVLRFAAVRTLNKVAMTHAMAVTNCNIDMESLISDQNRSIATLAITTLLKTGNESSVDRLMKQITNFMSDIADEFKIVVVEAIRSLCLKFPLKYRSLMNFLSNILREEGGFDYKKAIVDSIVILIRDIPEAKESGLLHLCEFIEDCEFTYLSTQILHFLGVEGPKTSDPSKYIRYIYNRVHLENATVRASAVSTMAKFGASVDALKPRIFVLLRRCLFDSDDEVRDRATLYLNTLGGDGRVVETDEDVKDFLFGQFDIPLANLETSLKNYEPSEEAFDIGSVPREVKSQPLAEKKASGKKPTGLGAPPRGPPSTTDSYERLLLSIPEFANFGKLFKSSEPVELTEAETEYAVNVVKHIFDRHVVFQYNCTNTIPEQLLEDVIVIVDASEAEEFSDVCSKPLRSLPYDSPGQTFVAFEKPEGLPVAGKFSNVLKFIVKEVDPATGEAEDDGVEDEYQLEDLEVVTADYILKVGVSNFRSAWESMGPENERVDEYGLGPRESLAEAVNTVINLLGMQPCEGTEVVPPNSRSHTCLLSGVFIGNVKVLVRLSFGLDGPKDVAMKLSVRSEDETVSDTIHEIVASG 923
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu5g02331 923 FunFam Coatomer subunit gamma 369 577 - -
Vimu5g02331 923 PANTHER COATOMER SUBUNIT GAMMA 2 921 IPR017106 -
Vimu5g02331 923 PIRSF Gamma-COP 47 921 IPR017106 -
Vimu5g02331 923 Gene3D Coatomer, gamma subunit, appendage domain 652 804 IPR037067 GO:0005198|GO:0006886|GO:0016192|GO:0030126
Vimu5g02331 923 FunFam Coatomer subunit gamma 805 921 - -
Vimu5g02331 923 SUPERFAMILY Subdomain of clathrin and coatomer appendage domain 808 920 IPR009028 GO:0006886|GO:0016192|GO:0030117
Vimu5g02331 923 Pfam Adaptin N terminal region 65 576 IPR002553 GO:0006886|GO:0016192|GO:0030117
Vimu5g02331 923 SUPERFAMILY Clathrin adaptor appendage domain 654 807 IPR013041 -
Vimu5g02331 923 FunFam Coatomer subunit gamma 651 804 - -
Vimu5g02331 923 SUPERFAMILY ARM repeat 63 600 IPR016024 -
Vimu5g02331 923 MobiDBLite consensus disorder prediction 629 657 - -
Vimu5g02331 923 Gene3D - 805 921 IPR012295 -
Vimu5g02331 923 FunFam Coatomer subunit gamma 59 352 - -
Vimu5g02331 923 Pfam Coatomer gamma subunit appendage platform subdomain 658 803 IPR013040 GO:0005198|GO:0006886|GO:0016192|GO:0030126
Vimu5g02331 923 Gene3D - 59 352 IPR011989 -
Vimu5g02331 923 Pfam Coatomer subunit gamma-1 C-terminal appendage platform 806 920 IPR032154 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu5g02331 Vimu-Chr5 34209942 34216707 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu5g02331 K17267 - gmx:100789362 1629.38
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu5g02331 5 34209942 34216707 Vimu5g02331 5 34209942 34216707 ECH