Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu5g02329 ATGCCTTCCCGAAGAAGAACTCTCTTGAAGGTCATCATTCTCGGTGACAGTGGATATGTGAATAAGAAGTTTAGTAATCAGTACAAGGCAACCATTGGAGCGGATTTTTTGACAAAGGAAGTGCAATTCGAAGATAGGCTCTTCACCTTACAGATTTGGGATACAGCTGGTCAAGAAAGATTCCAAAGCCTTGGAGTTGCTTTCTATCGAGGTGCTGATTGTTGTGTTCTTGTATATGATGTTAATTCAATGAAATCATTTGACAACCTTAACAACTGGAGGGAGGAATTTCTGATTCAAGCAAGTCCTTCCGATCCCGAGAATTTTCCTTTTGTTGTCATAGGAAACAAAATAGATATTGATGGTGGGAACAGCAGAGTGGTGTCAGAAAAGAAGGCTCGGGCTTGGTGTGCATCAAAAGGAAATATTCCATATTTTGAGACATCTGCCAAAGAAGGCATTAATGTTGAAGAAGCATTCCAATGCATAGCAAAGAATGCCCTGAAAAGTGGAGAAGAAGAAGAACTATACCTGCCAGACACAATTGATGTTGGAAACAGCAGTCAGCCACGGGCAACAGGGTGCGAGTGCTGA 594 0.4175 MPSRRRTLLKVIILGDSGYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPENFPFVVIGNKIDIDGGNSRVVSEKKARAWCASKGNIPYFETSAKEGINVEEAFQCIAKNALKSGEEEELYLPDTIDVGNSSQPRATGCEC 197
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu5g02329 197 ProSiteProfiles small GTPase Rab1 family profile. 3 197 - -
Vimu5g02329 197 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 5 172 IPR027417 -
Vimu5g02329 197 Pfam Ras family 19 168 IPR001806 GO:0003924|GO:0005525
Vimu5g02329 197 SMART ras_sub_4 6 170 - -
Vimu5g02329 197 SMART ran_sub_2 14 192 - -
Vimu5g02329 197 SMART rab_sub_5 9 170 - -
Vimu5g02329 197 PRINTS Transforming protein P21 ras signature 41 63 - -
Vimu5g02329 197 PRINTS Transforming protein P21 ras signature 23 39 - -
Vimu5g02329 197 PRINTS Transforming protein P21 ras signature 107 120 - -
Vimu5g02329 197 PRINTS Transforming protein P21 ras signature 145 167 - -
Vimu5g02329 197 Gene3D - 2 179 IPR027417 -
Vimu5g02329 197 NCBIfam small GTP-binding protein domain 21 163 IPR005225 GO:0005525
Vimu5g02329 197 FunFam Ras-related protein Rab7 1 180 - -
Vimu5g02329 197 ProSiteProfiles small GTPase Ras family profile. 1 197 IPR001806 GO:0003924|GO:0005525
Vimu5g02329 197 CDD Rab7 9 173 - -
Vimu5g02329 197 SMART rho_sub_3 11 170 IPR001806 GO:0003924|GO:0005525
Vimu5g02329 197 PANTHER RAB FAMILY 1 195 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu5g02329 Vimu-Chr5 34193577 34196515 Dispersed/Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu5g02329 K07897 - gmx:100305642 396.356
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu5g02329 5 34193577 34196515 Vimu5g02329 5 34193577 34196515 ECH