Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu5g02328 ATGGAGGAGAAACGCCGCGAAGCTGCTCCCTCCGCCGCAGATTCACCGGCATCGGAGCCCGCATCGTCTCGCCGCCGCGCCGGGGCCAACAAGCGCAAGTCAGCTGCTCTCAACGCCTCTGGTTCCTCCTCCGCCCCCTCCAAACGCGCCGCTCGCGACAAGGCCTCGCCGCTCCACCCTCCTCCCCTCCACAATGGCCCCCTCACCCGGGCCCGCCAGACCCCCAACTCCCTCGCCGCCGCCGCTTCCTCGTCCGCCGCTGCTTCCGCTCCCGCCGCCGTCAAACACTCCGAACGCACCCATCCCTCTGCTGCAGACTCCGCCGCACTCGCCGAGCAGCTGAGGAAAGAGAGCGAGTGGGAGACTCTGGAGGCCGCGATTGAAGCGGAATTCGAAGCCATCAGATCTCGCGGTGCCAATGCGCACGTGGTTCCCACTCATTGCGGTTGGTTTTCATGGTTGTATATTCATGAAATTGAGAAGCAAATGTTACCTTCTTTCTTTAATGGCAAAACTGAAAATCGGACGCCTGGTGTATACATGGAGATACGAAATTGGATAATGAAGAAGTTTCATTCAAATCCGAATGTGCAAATTGAATTGAAAGATATGTCACAGCTTAATGTTGGAGATATGGATGCTAGGCAAGAGGTAATGGAATTTCTGGACTATTGGGGTTTAATTAACTTCCACCCATTCCCTTCAATGGATTCTGCTGTGGCCACTGCCAGTGATGACGGAGAAGCAGAAAAAAGTTCTTTGCTTGAAAAATTGTATCACTTTGAAACTCTGCAATTATGTCGACCTGTTCAAAGGTCTAGCCAAATGACTCCAGCTACAGCCTCTGGCTTGTTTCCAGAGTCTACCATTGCTGAAGAGTTGGTGAAACAAGAGGGGCCAGCTGTTGAGATGCTTGAGTACCATTGCAATTCATGTTCTGCTGATTGTTCTCGCAAACGTTACCATTGCCAGAAGCAGGCAGATTTTGATCTGTGTTCCGACTGCTTTAGTAATAGAAGATTTGGCTCTGGCATGTCTTCATTGGATTTTATACTCATGGAACCAGCTGAAGTTGCAGGGGTTAATGGTGGAAGGTGGACTGATCAAGAGACCCTTCTGCTACTAGAAGCCTTAGAACTTTATAAAGAAAATTGGAATGAAATTGCTGAACATGTTGGAACAAAAACAAAAGCTCAGTGCATATCGTACTTTGTTCAAATGCCAATTGAGGATACCTTTGCTGAATTTGATGATAATATTGATGCTGGTTGCAAAGAACCAACAGATCCAGTTGCAACAAACAATGACTCATCTGTGGACAAGGACGCTTCAGAGTGTATTGAGAATGATACTAGCGATGGCATCAAAGACCAGGATAAAAATTCCAAGGCTGAGGATGTTGAAGTAAAGGTGAATCAGGAGGAGAATCTAAAGTTACAAGAAGGTAGTGATGAGAAAGCCAGTGAGGGAACTTCTAAATCTGAAGATGCTGTTAAGGGGAAGTCTGATCAGGAAGCAGGTAATGAATGTGCTATAAATGCTCTCAAGGAAGCATTTGCTGCTGTTGGTTATTCTCCTGGACCTGATGGACCTTCTTCATTTGCTGAAGTGGGTAATCCTGTCATGGCACTGGCAACGTTCCTTGCACACTTGGTGGGTACTGATGTGGCTGTTGCTTCAGCTCATAGCTCCATAAAATCCATGTCAAGAAATTCTCCTGGCACTGACCTTGCTGCAAGGTGTTGCTTTCTTCTAGAAGATCCGCCAGATAATAAGAATGAACCAACTAGTTCTGAGAAGGATTCTAAAAGTGAGGGAGATCAGGACGAAGTAAATGTAAAGAAGGACAAACCAATGTTGGATGATAAAGATTTACCAAACGATCACAGTAAGATGAAAGTTGGAAGTGACACTTTAGAAGACAAGGGACAGCCGGCTTCCACAGATGGTGCAGCCTCAGAAAAGCCAATTTCTCCAAAGGACCAACAAATGGTTAATCATGAAAGTGGGATTGACAATTGTAATGCTCCTATCAGTGCAAAGCTATCCAATGATCAAGCACCAGACACTCTGCATGATTCAGGTGGTTCAACATCCAAGGCTGAAACTAAATCTAATTCTGACCAGGTTCAGGAGGGATCCTTAATTGAAGAAACTTGTCCTGCAAAGGGCATATCTGTGTCTGATTCTCTTCCATCGGAGAAGAAAGAACATCAGCCACTAAAATCCAATTTACCAGCAGAGTGTCCAAAGCTAGTAGAGACATCAAAATGTGAGATAGCCTCTGATTCTATTCCCCCAACTAAGAACAAGTCTCAAAATCCACCATCTACAAATCCAGTTTGTGAATCTGTAGAAACAACAGACTCAGCCATGGATGTTGAAGAAGTTTCTAATTCCTTGCCGTCAGAAAAGGTTGACTCGCAGGCACTACTTACAAGAAAATCATCCCAATGTAATGGGATAGAAAAGGATGTAGATATGATGTCACCATCAAATCCAGTTAGATCAAATTCTGCTGCTGAGAATGGTGCAAATACAGGGACAGGTAAAGATCAGACAGATAATGGAGCAAAAGTGGAAGATAACTATACAAGGATTAAACAGGACAGCAATTTTGAGAAAATGAAACGAGCTGCAGTTTCTACACTTGCTGCAGCAGCAGTAAAAGCAAAAGTTCTAGCAAATCAGGAAGAAGACCAAATCCGACAGCTTACTTCCTTGTTAATAGAAAAACAGTTGCTCAAGTTGGAAACTAAGGTGGCTTTTTTCAATGAGGTGGAGAATGTGGTGATGAGGGCAAGGGAGCATGTAGAGCGATCAAGGCATAAGCTTTATCACGAGCGTGCGTTGATTATTGCATCGCGGCTTGGTATATCAGCGTCGTCCTCTAGAGGTATACCGCCAACTGTATCAACTAATAGAATTCCTACAAATATTGCGAACTCACTCCAAAGACCACAAATGATGATGAGTCCACAAAGGCCACTTCTTTCCAGACCTGCAGCCACTGTAGCTTCAACTCTTCAAAACCCATTAGCATCTTCGACTGCAGCAGGAAACTCAGTTCGGCCATCTAACCAGGAAAAACTTTCTTCTGTTGGGACAAAATAA 3114 0.4531 MEEKRREAAPSAADSPASEPASSRRRAGANKRKSAALNASGSSSAPSKRAARDKASPLHPPPLHNGPLTRARQTPNSLAAAASSSAAASAPAAVKHSERTHPSAADSAALAEQLRKESEWETLEAAIEAEFEAIRSRGANAHVVPTHCGWFSWLYIHEIEKQMLPSFFNGKTENRTPGVYMEIRNWIMKKFHSNPNVQIELKDMSQLNVGDMDARQEVMEFLDYWGLINFHPFPSMDSAVATASDDGEAEKSSLLEKLYHFETLQLCRPVQRSSQMTPATASGLFPESTIAEELVKQEGPAVEMLEYHCNSCSADCSRKRYHCQKQADFDLCSDCFSNRRFGSGMSSLDFILMEPAEVAGVNGGRWTDQETLLLLEALELYKENWNEIAEHVGTKTKAQCISYFVQMPIEDTFAEFDDNIDAGCKEPTDPVATNNDSSVDKDASECIENDTSDGIKDQDKNSKAEDVEVKVNQEENLKLQEGSDEKASEGTSKSEDAVKGKSDQEAGNECAINALKEAFAAVGYSPGPDGPSSFAEVGNPVMALATFLAHLVGTDVAVASAHSSIKSMSRNSPGTDLAARCCFLLEDPPDNKNEPTSSEKDSKSEGDQDEVNVKKDKPMLDDKDLPNDHSKMKVGSDTLEDKGQPASTDGAASEKPISPKDQQMVNHESGIDNCNAPISAKLSNDQAPDTLHDSGGSTSKAETKSNSDQVQEGSLIEETCPAKGISVSDSLPSEKKEHQPLKSNLPAECPKLVETSKCEIASDSIPPTKNKSQNPPSTNPVCESVETTDSAMDVEEVSNSLPSEKVDSQALLTRKSSQCNGIEKDVDMMSPSNPVRSNSAAENGANTGTGKDQTDNGAKVEDNYTRIKQDSNFEKMKRAAVSTLAAAAVKAKVLANQEEDQIRQLTSLLIEKQLLKLETKVAFFNEVENVVMRAREHVERSRHKLYHERALIIASRLGISASSSRGIPPTVSTNRIPTNIANSLQRPQMMMSPQRPLLSRPAATVASTLQNPLASSTAAGNSVRPSNQEKLSSVGTK 1037
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu5g02328 1037 ProSiteProfiles Zinc finger ZZ-type profile. 304 358 IPR000433 GO:0008270
Vimu5g02328 1037 MobiDBLite consensus disorder prediction 1012 1037 - -
Vimu5g02328 1037 Gene3D - 301 350 IPR043145 -
Vimu5g02328 1037 MobiDBLite consensus disorder prediction 441 503 - -
Vimu5g02328 1037 SUPERFAMILY RING/U-box 299 346 - -
Vimu5g02328 1037 PANTHER SWI/SNF COMPLEX-RELATED 74 959 - -
Vimu5g02328 1037 SMART zz_5 303 347 IPR000433 GO:0008270
Vimu5g02328 1037 SUPERFAMILY Homeodomain-like 149 231 IPR009057 -
Vimu5g02328 1037 ProSiteProfiles SANT domain profile. 365 412 IPR017884 -
Vimu5g02328 1037 MobiDBLite consensus disorder prediction 69 84 - -
Vimu5g02328 1037 ProSiteProfiles Myb-like domain profile. 358 408 IPR001005 -
Vimu5g02328 1037 MobiDBLite consensus disorder prediction 35 49 - -
Vimu5g02328 1037 ProSitePatterns Zinc finger ZZ-type signature. 309 335 IPR000433 GO:0008270
Vimu5g02328 1037 Pfam SWIRM-associated region 1 883 960 IPR032451 -
Vimu5g02328 1037 MobiDBLite consensus disorder prediction 831 854 - -
Vimu5g02328 1037 SMART sant 362 410 IPR001005 -
Vimu5g02328 1037 MobiDBLite consensus disorder prediction 823 860 - -
Vimu5g02328 1037 ProSiteProfiles SWIRM domain profile. 142 239 IPR007526 GO:0005515
Vimu5g02328 1037 CDD SANT 382 407 IPR001005 -
Vimu5g02328 1037 MobiDBLite consensus disorder prediction 1 111 - -
Vimu5g02328 1037 MobiDBLite consensus disorder prediction 659 714 - -
Vimu5g02328 1037 Pfam SWIRM domain 145 230 IPR007526 GO:0005515
Vimu5g02328 1037 Gene3D - 361 412 - -
Vimu5g02328 1037 MobiDBLite consensus disorder prediction 592 638 - -
Vimu5g02328 1037 SUPERFAMILY Homeodomain-like 361 412 IPR009057 -
Vimu5g02328 1037 Gene3D - 148 233 IPR036388 -
Vimu5g02328 1037 MobiDBLite consensus disorder prediction 761 803 - -
Vimu5g02328 1037 MobiDBLite consensus disorder prediction 425 505 - -
Vimu5g02328 1037 FunFam SWI/SNF complex subunit SMARCC2 isoform C 362 412 - -
Vimu5g02328 1037 Pfam Zinc finger, ZZ type 306 341 IPR000433 GO:0008270
Vimu5g02328 1037 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 361 400 IPR017930 -
Vimu5g02328 1037 MobiDBLite consensus disorder prediction 585 803 - -
Vimu5g02328 1037 CDD ZZ_RSC8 307 351 IPR041984 -
Vimu5g02328 1037 Pfam Myb-like DNA-binding domain 364 406 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu5g02328 Vimu-Chr5 34185302 34196728 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu5g02328 307 404 EF-hand Containing Proteins AT3G07740 36.207 8.10e-12 67.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu5g02328 K11649 - gmx:100799723 1617.82
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu5g02328 5 34185302 34196728 Vimu5g02328 5 34185302 34196728 ECH