Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu5g02323 ATGACAGAGATCCATTGGGCTTGGAGGAACAAAACCGAAACCATTAATCTAGGTGGGGAGGAACTGAAGCTTAGTATCTCTGTTCCATCTTGTTTCGGAGTTTCAGCAATGGTTCCTCAAGCTTTGTCAGTGCCCGCCAGCGCCAGCTTCACCATAGCTTCTCGCTCCAGAACTCCCTCCCACGTTGATGCATGTGAATACCTATTGTTGACCATCATTCGTTGTTCAAGGCTTGCTTTATCTATGATTATTAACTGGAAAAGGGAATTTACTTGTAGTTATGGTGCAATTGAGGCCAGTAAGGGGAATCCATCAATAACACCAGCAGTGATGACTCCCGGAGGACCTCTTGATCTGTCATCTGTTTTGTTCAGGAATCGTATAATATTCATAGGGCAGCCAGTTAATGCACAAGTGGCTCAAAGGGTTATATCACAGCTTGTGACTCTTGCTACTATTGATGAAAAATCAGATATACTGGTATATATAAATTGCCCCGGTGGAAGCACCTATTCAGTATTGGCAGTCTATGATTGCATGTCTTGGTTGCTTCAATTCCCTATTAGTTGTCAATGTTTCTACCTGAAAGAATTTGGTGACTCCATCTTTCAGATTAAGCCCAAGGTTGGTACCGTTTGTTTTGGAGTAGCTGCAAGCCAAGGAGCACTTCTCCTTGCTGGAGGAGAGAAGGGAATGCGCTATGCGATGCCAAATGCTCGCATTATGATACATCAACCACAGAGTGGATGTGGGGGTCATGTTGAGGATGTCAGACGCCAAGTGAATGAAGCTGTTCAATCTCGCCATAAAATCGACAAGATGTATAGTGCTTTTACGGGACAGCCATTGGAGAAGGTGCAGCAGTACACAGAAAGGGACCGTTTTCTGTCTGTTTCCGAGGCTTTGGAGTTTGGTCTTATTGATGGTGTCCTGGAAACAGAGTATTGA 948 0.4441 MTEIHWAWRNKTETINLGGEELKLSISVPSCFGVSAMVPQALSVPASASFTIASRSRTPSHVDACEYLLLTIIRCSRLALSMIINWKREFTCSYGAIEASKGNPSITPAVMTPGGPLDLSSVLFRNRIIFIGQPVNAQVAQRVISQLVTLATIDEKSDILVYINCPGGSTYSVLAVYDCMSWLLQFPISCQCFYLKEFGDSIFQIKPKVGTVCFGVAASQGALLLAGGEKGMRYAMPNARIMIHQPQSGCGGHVEDVRRQVNEAVQSRHKIDKMYSAFTGQPLEKVQQYTERDRFLSVSEALEFGLIDGVLETEY 315
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu5g02323 315 Gene3D - 98 315 - -
Vimu5g02323 315 SUPERFAMILY ClpP/crotonase 117 313 IPR029045 -
Vimu5g02323 315 CDD S14_ClpP_2 118 310 IPR001907 GO:0004176|GO:0004252|GO:0006508
Vimu5g02323 315 Pfam Clp protease 118 183 IPR023562 -
Vimu5g02323 315 Pfam Clp protease 200 313 IPR023562 -
Vimu5g02323 315 ProSitePatterns Endopeptidase Clp histidine active site. 233 246 IPR033135 -
Vimu5g02323 315 PRINTS Clp protease catalytic subunit P signature 118 133 IPR001907 GO:0004176|GO:0004252|GO:0006508
Vimu5g02323 315 PRINTS Clp protease catalytic subunit P signature 289 308 IPR001907 GO:0004176|GO:0004252|GO:0006508
Vimu5g02323 315 PRINTS Clp protease catalytic subunit P signature 232 251 IPR001907 GO:0004176|GO:0004252|GO:0006508
Vimu5g02323 315 PRINTS Clp protease catalytic subunit P signature 211 228 IPR001907 GO:0004176|GO:0004252|GO:0006508
Vimu5g02323 315 PANTHER ATP-DEPENDENT CLP PROTEASE PROTEOLYTIC SUBUNIT 112 193 IPR023562 -
Vimu5g02323 315 Hamap ATP-dependent Clp protease proteolytic subunit [clpP]. 102 314 IPR001907 GO:0004176|GO:0004252|GO:0006508
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu5g02323 Vimu-Chr5 34139958 34143124 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu5g02323 K01358 - gmx:100799710 396.741
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu5g02323 5 34139958 34143124 Vimu5g02323 5 34139958 34143124 ECH