Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu5g02321 ATGGCAGAGGGAAAGGGAGTTGAAACTCAGAAAGCACTTGATGATTTCGATCCTCCCAAGAAGCCCAAAACAAACTTCTATGCTTTTGGCTGCGCTATATTGGCCTCCACTACATGCATTCTACTTGGTTATGATATTGGGGTGATGACCGGTGCAGCCATATACATAAAGAAGGACCTAAAGGTGTCGGATGTGCAAATAGAGATACTCTTGGGAATCATCAACCTCTACTCTCTCATAGGCTCATGCTTGGCCGGCAGAACCTCCGATTGGATAGGCCGGCGATACACCATTGTCTTCGCCGGCACCATCTTCTTCGCCGGGGCAATTCTCATGGGTTTCTCTCCCAACTATGCTTTTCTGATGTTCGGCCGTTTCGTGGCCGGCATAGGCATCGGCTACGCCCTCATGATTGGCCCTGTCTACTCCGCCGAGGTCTCCCCAGCCTCCTATCGTGGCTTCCTCACTTCTTTCACCGATGCTTTTATTAATGGAGGGATATTGCTGGGATACATATCCAACTTCGCATTTTCAAAGATGACATTGAAGTTGGGATGGCGAATGATGCTTGGGGTCGGTGCAATTCCTTCGGCACTCATAACATTGGGAGTGTTGGCGATGCCGGAATCTCCGCGGTGGCTGGTGATGAGGGGACGTTTGGGAGAGGCAACGAAAGTGCTTAACAAAACCTCCGACAGCAAGGAAGAAGCTCAACTGAGGCTGGCCGAGATCAAACAAGCAGCAGGGATACCAGAGAGTTGCAACGACGACGTCGTTCAAGTAACGAAACAAAGCACGGGCAAGGACGTGTGGAAAGAGTTGTTCCTTTATCCAACGCCTGCAGTTCGTCACATCGTAATTGCAGCGCTCGGGATTTACTGCTTCCAACAATCGTCGGGCGTGGACGCCATCGTTTTATACAGTCCGAGAATCTTCCAGAATGCTGGGATGACCGATGACACACATACGCTTCTTGCAACGGTGGCCGTTGGATTCGTAAAGACGTTGTTCATCGTGCTTTCTTCTTTAGTATTGGACCGCGTGGGACGTCGTCCCATGTTGTTGTCTAGTGTCGGAGGCATGATGGTCTCGCTTCTCACTCTCGGAATAGCCTTTACCATCATTGAGCACTCTGAGAGTAAACCGATATGGGGCATTGGATTGAGCATAGCTATGGTGTTAGCTTTCGTGGCCACATTTTCCATCGGTGCGGGACCCATCACGTGGGTATACAGCGCTGAGGTGTTTCCGTTGAGGTTGCGGGCGCAGGGTGTGGCCGCCGGTGTTGTGGTGAATAGAGTCAGTAGTGGGGTTGTTACAATGACCTTTTTGTCCCTCACTAAAGCCATCACTTTTGGTGGAACTTTCTTTCTCTATTCTGGTATTTCAGTGATCGGGTGGTTATTCTTCTACTTTGCGCTTCCCGAGACACGGGGTAAAACACTTGAAGAAATGGAAGGGGCTTTCGGTCATTTCGGTGCCAAATCTAACTCCAAATACAAGGGAGTAGAAAATGGAAATGGCAGAGTGCCACAAGTTCAGCTGGGGACCAATCTCAGTACTTAA 1566 0.4981 MAEGKGVETQKALDDFDPPKKPKTNFYAFGCAILASTTCILLGYDIGVMTGAAIYIKKDLKVSDVQIEILLGIINLYSLIGSCLAGRTSDWIGRRYTIVFAGTIFFAGAILMGFSPNYAFLMFGRFVAGIGIGYALMIGPVYSAEVSPASYRGFLTSFTDAFINGGILLGYISNFAFSKMTLKLGWRMMLGVGAIPSALITLGVLAMPESPRWLVMRGRLGEATKVLNKTSDSKEEAQLRLAEIKQAAGIPESCNDDVVQVTKQSTGKDVWKELFLYPTPAVRHIVIAALGIYCFQQSSGVDAIVLYSPRIFQNAGMTDDTHTLLATVAVGFVKTLFIVLSSLVLDRVGRRPMLLSSVGGMMVSLLTLGIAFTIIEHSESKPIWGIGLSIAMVLAFVATFSIGAGPITWVYSAEVFPLRLRAQGVAAGVVVNRVSSGVVTMTFLSLTKAITFGGTFFLYSGISVIGWLFFYFALPETRGKTLEEMEGAFGHFGAKSNSKYKGVENGNGRVPQVQLGTNLST 521
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu5g02321 521 ProSiteProfiles Major facilitator superfamily (MFS) profile. 31 478 IPR020846 GO:0022857
Vimu5g02321 521 FunFam probable polyol transporter 4 21 492 - -
Vimu5g02321 521 Gene3D MFS general substrate transporter like domains 21 491 IPR036259 -
Vimu5g02321 521 ProSitePatterns Sugar transport proteins signature 1. 85 102 IPR005829 GO:0016020|GO:0022857|GO:0055085
Vimu5g02321 521 SUPERFAMILY MFS general substrate transporter 17 486 IPR036259 -
Vimu5g02321 521 Pfam Sugar (and other) transporter 32 489 IPR005828 GO:0016020|GO:0022857|GO:0055085
Vimu5g02321 521 NCBIfam sugar porter family MFS transporter 18 485 IPR003663 GO:0016020|GO:0022857|GO:0055085
Vimu5g02321 521 ProSitePatterns Sugar transport proteins signature 1. 341 357 IPR005829 GO:0016020|GO:0022857|GO:0055085
Vimu5g02321 521 ProSitePatterns Sugar transport proteins signature 2. 127 152 IPR005829 GO:0016020|GO:0022857|GO:0055085
Vimu5g02321 521 PRINTS Sugar transporter signature 122 141 IPR003663 GO:0016020|GO:0022857|GO:0055085
Vimu5g02321 521 PRINTS Sugar transporter signature 39 49 IPR003663 GO:0016020|GO:0022857|GO:0055085
Vimu5g02321 521 PRINTS Sugar transporter signature 296 306 IPR003663 GO:0016020|GO:0022857|GO:0055085
Vimu5g02321 521 PRINTS Sugar transporter signature 413 425 IPR003663 GO:0016020|GO:0022857|GO:0055085
Vimu5g02321 521 PRINTS Sugar transporter signature 390 411 IPR003663 GO:0016020|GO:0022857|GO:0055085
Vimu5g02321 521 Coils Coil 227 247 - -
Vimu5g02321 521 PANTHER SOLUTE CARRIER FAMILY 2, FACILITATED GLUCOSE TRANSPORTER 23 489 IPR045262 GO:0015144
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu5g02321 Vimu-Chr5 34123380 34125341 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu5g02321 18 518 Organic Solute Cotransporters AT3G18830 65.010 0.0 688
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu5g02321 - - vun:114168664 982.245