Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Vimu5g02310 | ATGGACATTGATTTCAAAGACTACCAATTGCGCTGCGAGCTTCGTGGCCACGAAGACGATGTTCGCGGAATATGCGTTCGCGGCAGCGAGGCCATTGCGACCTCGTCGAGGGACCGGTCGGTTAGGTTGTGGTCTCTGGACAGCAACCGCAAGTTCGTAAGTTCCAAGATTCTTTTGGGGCACACGAGCTTTGTGGGACCTTTGGCATGGATTCCCCCGAATTCGGAGTTTCCGCTTGGTGGGATTGTGTCTGGCGGCATGGACACTTTGGTCTGTGTCTGGGACTTGAACACTGGTGAGAAGGTTCATACTCTCAAAGGCCATCAGTTGCAGGTCACTGGCATTGTGTTTGATGAAGGGGATGTTGTGTCCTCTTCTGTTGACTGTACCTTAAGGCGGTGGAGAAATGGGCAACCTGTAGAGACGTGGGAAGCTCACAAGGCACCAGTCCAAGCAGTTATAAAGTTGCCATCAGGAGAGTTTGTTACTGATACCGTTCGTGGCTTGTCTGTGATGTCTGGTCTTGGAATCCTATCTGCATCTCATGACGGTTCTCTTAGATTATGGGCAGTAAGTGGTGAAGTGTTAATGGAGATGGTTGGTCATACTGCTATTGTTTATTCAGTTGATTCACATGCATCGGGACTTATTGTCAGTGGTAGCGAAGATCGTTTTGCCAAAGTTTGGAAAGATGGAGTTTGTGTTCAGAGCATAGAACATCCTGGTTGTGTTTGGGATGCAAAGTTTATGGAAAATGGGGATATTGTGACAGCATGTTCAGATGGAGTCGTACGCATTTGGACTGTAGATCAGAATAATGTTGCTGAACAGCAAGAGCTTGATTTATATACTTCACAACTTTCTCTATACAAATCTAGTAGGAAGAGGGTTGGAGGATTGAAATTAGAAGAGTTACCAGGCTTGGAGGCACTAAAGATTCCAGGAACAACTGATGGCCAGACAAAAATAGTGAGAGAGGGGGATAATGGGGTGGCATATGGATGGAACACGAGAGAACAGAAGTGGGATAAAATCGGTGAAGTTGTTGATGGACCCGAGGATTCAAATCGCCAACTGTTTGATGGTATTCAGTATGATTATGTGTTTGATGTGGATATTGGTGATGGTATGCCTATCCGTAAGCTGCCATACAATCGATCAGGCAGCATGTTTAATCCTGATTTAATAATGAACAGACTCGCTTTCTTGTGCCACATCAGGAGAAGTTATCTTGTTGTTCTATGA | 1245 | 0.457 | MDIDFKDYQLRCELRGHEDDVRGICVRGSEAIATSSRDRSVRLWSLDSNRKFVSSKILLGHTSFVGPLAWIPPNSEFPLGGIVSGGMDTLVCVWDLNTGEKVHTLKGHQLQVTGIVFDEGDVVSSSVDCTLRRWRNGQPVETWEAHKAPVQAVIKLPSGEFVTDTVRGLSVMSGLGILSASHDGSLRLWAVSGEVLMEMVGHTAIVYSVDSHASGLIVSGSEDRFAKVWKDGVCVQSIEHPGCVWDAKFMENGDIVTACSDGVVRIWTVDQNNVAEQQELDLYTSQLSLYKSSRKRVGGLKLEELPGLEALKIPGTTDGQTKIVREGDNGVAYGWNTREQKWDKIGEVVDGPEDSNRQLFDGIQYDYVFDVDIGDGMPIRKLPYNRSGSMFNPDLIMNRLAFLCHIRRSYLVVL | 414 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Vimu5g02310 | 414 | Pfam | WD domain, G-beta repeat | 12 | 45 | IPR001680 | GO:0005515 | |
| Vimu5g02310 | 414 | Pfam | WD domain, G-beta repeat | 99 | 134 | IPR001680 | GO:0005515 | |
| Vimu5g02310 | 414 | Pfam | WD domain, G-beta repeat | 137 | 189 | IPR001680 | GO:0005515 | |
| Vimu5g02310 | 414 | Pfam | WD domain, G-beta repeat | 195 | 230 | IPR001680 | GO:0005515 | |
| Vimu5g02310 | 414 | Pfam | WD domain, G-beta repeat | 233 | 267 | IPR001680 | GO:0005515 | |
| Vimu5g02310 | 414 | Gene3D | - | 352 | 392 | IPR038122 | - | |
| Vimu5g02310 | 414 | PRINTS | G protein beta WD-40 repeat signature | 177 | 191 | IPR020472 | - | |
| Vimu5g02310 | 414 | PRINTS | G protein beta WD-40 repeat signature | 82 | 96 | IPR020472 | - | |
| Vimu5g02310 | 414 | PRINTS | G protein beta WD-40 repeat signature | 32 | 46 | IPR020472 | - | |
| Vimu5g02310 | 414 | PANTHER | PHOSPHOLIPASE A-2-ACTIVATING PROTEIN | 6 | 388 | - | - | |
| Vimu5g02310 | 414 | SMART | WD40_4 | 7 | 45 | IPR001680 | GO:0005515 | |
| Vimu5g02310 | 414 | SMART | WD40_4 | 98 | 135 | IPR001680 | GO:0005515 | |
| Vimu5g02310 | 414 | SMART | WD40_4 | 136 | 190 | IPR001680 | GO:0005515 | |
| Vimu5g02310 | 414 | SMART | WD40_4 | 51 | 95 | IPR001680 | GO:0005515 | |
| Vimu5g02310 | 414 | SMART | WD40_4 | 231 | 268 | IPR001680 | GO:0005515 | |
| Vimu5g02310 | 414 | SMART | WD40_4 | 192 | 230 | IPR001680 | GO:0005515 | |
| Vimu5g02310 | 414 | Pfam | PFU (PLAA family ubiquitin binding) | 314 | 391 | IPR015155 | - | |
| Vimu5g02310 | 414 | SUPERFAMILY | WD40 repeat-like | 4 | 277 | IPR036322 | GO:0005515 | |
| Vimu5g02310 | 414 | ProSiteProfiles | Trp-Asp (WD) repeats profile. | 199 | 230 | IPR001680 | GO:0005515 | |
| Vimu5g02310 | 414 | ProSiteProfiles | Trp-Asp (WD) repeats circular profile. | 14 | 50 | - | - | |
| Vimu5g02310 | 414 | ProSitePatterns | Trp-Asp (WD) repeats signature. | 82 | 96 | IPR019775 | - | |
| Vimu5g02310 | 414 | ProSiteProfiles | Trp-Asp (WD) repeats profile. | 58 | 104 | IPR001680 | GO:0005515 | |
| Vimu5g02310 | 414 | ProSiteProfiles | Trp-Asp (WD) repeats profile. | 14 | 54 | IPR001680 | GO:0005515 | |
| Vimu5g02310 | 414 | CDD | WD40 | 10 | 267 | - | - | |
| Vimu5g02310 | 414 | ProSiteProfiles | PFU domain profile. | 334 | 414 | IPR015155 | - | |
| Vimu5g02310 | 414 | Gene3D | - | 164 | 286 | IPR015943 | GO:0005515 | |
| Vimu5g02310 | 414 | Gene3D | - | 3 | 163 | IPR015943 | GO:0005515 |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Vimu5g02310 | 1 | 392 | Acyl Lipid Metabolism Gene Families | AT3G18860 | 67.703 | 0.0 | 601 |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Vimu5g02310 | K14018 | - | gmx:100816481 | 721.85 |
Event-related genes
| Select | Gene_1 | Chr_1 | Start_1 | End_1 | Gene_2 | Chr_2 | Start_2 | End_2 | Event_name |
|---|---|---|---|---|---|---|---|---|---|
| Vimu5g02310 | 5 | 34035107 | 34038985 | Vimu5g02310 | 5 | 34035107 | 34038985 | ECH |