Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu5g02307 ATGGAAATATCTAGCATATGGATAAAGAAACTGGTGTGGTCGTTATGGGTCACACGCAGAGAGCTAATCACGAATCCTCAACACAGAGTGTTCCCAAAGTTTGGATCCATGAAGGCTTTCAGTGCCATAAATTCCACAAATTCATGTCTTCCCAATACCCATTTCCTCAAAGTCCCTATCTTTCATCCCTTCTTCAGATTCAATCCATTCGGCCATGCTGCAAACAGAGCTCACAAGCTTCCATTCACCATCAGCTGCAAGCTCAAAAGCTCGGATGTCGAAAACAAAGGGAAGAGCGTGTCCCAGAAGATTATCTTATCAGAAGCTTCCTCTCCACTACTCACTGAGGATGATGGCACCAATGGTGACACTGGGGATGTTCCACAGAGCTCAAAGAAAAAAAAGGGAGGCCCTTTTGGGTTGCTCAACATGCTCAGAAGAAAGACTTTGCAGATTCTCTCTAGTTTGCCATTGGCTATTGCGGACATGTTTGCTGCTGCTGCTTTGATGGCTTTGGGAACAATTATTGAACAAGGTGAAGCTCCTGACTTTTATTTCCAGAAATACCCTGAAGATGATCCTGTGTTTGGATTTTTTACTTGGAGATGGATTCTCGCCCTTGGTTTTGATCACATGTTTTCGTCCCCTGTATTTCTTGGAGTGTTGGCTCTCCTGGGTGCATCCCTCTTGGCCTGCACATACACAACTCAACTCCCCCTCATCACGGTTTCAAGAAGATGGTCATTTTTGCATTCTGCCGAGGCTATACGCAAGCAAGAATTTTCAGAGTCATTGCCAAGATCATCAATCCAAGATGTTGGTACTCTTTTGATGGGATCTGGATACGAGGTATTCTTGAAAGGACCATCTTTATATGCCTTTAAAGGACTTGCAGGTAGGTTGGCCCCTGTTGGAGTTCATATAGCACTGTTACTTGTAATGGCTGGAGGAACTGTTAGTGCTGCTGGGAGCTTCAGAGGTTCGGTCACTGTGCCCCAGGGCCTGAATTTTGTTGTTGGTGATGTTCTGGTTCCTTCTGGCTTTCTCTCCTCTCCAACTGAGGCTTTTAATACGGAGATTCATGTCAACAGATTCTACATGGATTATTATGAGAGTGGAGAGGTTTCACAGTTCTACACTGATCTTTCCCTTCGTAACATGGATGGGAAAGAAGTAATGAGGAAGACAATCAGTGTAAATGATCCTTTAAGATACGGTGGTATCACCATATATCAAACAGATTGGAGTATTTCGGCTCTGCAAATTCTTAAGGATAATGAAGGACCGTATAACTTGGCTATGGCACCTTTACAGATCAATGGAGATAAGAAACTTTTTGGTACTTTTCTACCGGTTGGAGATATTAACTCTCCTGACGTTAAGGGAATATCTATGCTTGCTCGTGATCTACAATCAATCGTCCTTTATGATAAAGAAGGAAAATTTGTGGGAGTTAGACGCCCTAATTCGAAGCTCCCAATCAATATTGATGGATCAGACATTGTAATTGTTGATGCAATAGGAAGTAGTGGCTTGGACTTGAAGACTGATCCAGGTGTCCCAGTTGTATATGCTGGATTTGGTGCTCTAATGATCACTACTTGCATCAGCTATTTATCTCATTCACAGATATGGGCTTTACAAGATGGAACAACAGTCGTCATTGGAGGAAAGACTAACAGAGCAAAGATGGAGTTTCCGGAGGAGATGAACCTCTTACTTGATAAAGTCCCTGAAATTGTTGAATCAACTCTGTCTAAGCAAGCTGATAGCATTAGTGGTTCGCTTATGGATTGA 1797 0.4285 MEISSIWIKKLVWSLWVTRRELITNPQHRVFPKFGSMKAFSAINSTNSCLPNTHFLKVPIFHPFFRFNPFGHAANRAHKLPFTISCKLKSSDVENKGKSVSQKIILSEASSPLLTEDDGTNGDTGDVPQSSKKKKGGPFGLLNMLRRKTLQILSSLPLAIADMFAAAALMALGTIIEQGEAPDFYFQKYPEDDPVFGFFTWRWILALGFDHMFSSPVFLGVLALLGASLLACTYTTQLPLITVSRRWSFLHSAEAIRKQEFSESLPRSSIQDVGTLLMGSGYEVFLKGPSLYAFKGLAGRLAPVGVHIALLLVMAGGTVSAAGSFRGSVTVPQGLNFVVGDVLVPSGFLSSPTEAFNTEIHVNRFYMDYYESGEVSQFYTDLSLRNMDGKEVMRKTISVNDPLRYGGITIYQTDWSISALQILKDNEGPYNLAMAPLQINGDKKLFGTFLPVGDINSPDVKGISMLARDLQSIVLYDKEGKFVGVRRPNSKLPINIDGSDIVIVDAIGSSGLDLKTDPGVPVVYAGFGALMITTCISYLSHSQIWALQDGTTVVIGGKTNRAKMEFPEEMNLLLDKVPEIVESTLSKQADSISGSLMD 598
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu5g02307 598 Coils Coil 597 598 - -
Vimu5g02307 598 PANTHER CYTOCHROME C BIOGENESIS PROTEIN CCS1, CHLOROPLASTIC 96 583 IPR023494 -
Vimu5g02307 598 MobiDBLite consensus disorder prediction 113 135 - -
Vimu5g02307 598 MobiDBLite consensus disorder prediction 113 127 - -
Vimu5g02307 598 Hamap Cytochrome c biogenesis protein Ccs1 [ccs1]. 146 575 IPR023494 -
Vimu5g02307 598 Pfam ResB-like family 158 422 IPR007816 -
Vimu5g02307 598 Pfam ResB-like family 458 570 IPR007816 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu5g02307 Vimu-Chr5 34022379 34026769 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu5g02307 54 589 Miscellaneous Gene Families AT1G49380 66.114 0.0 749
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu5g02307 K07399 - gmx:100807003 944.495
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu5g02307 5 34022379 34026769 Vimu5g02307 5 34022379 34026769 ECH