Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu5g02306 ATGGCTTTCTCTGCTCATCTTTGCCGTCTCCCTGCCTCACGTGCCGACATCGCTTTACCAGAATCTCTCACCAGAATCCGCTGCCGGAAACCTTTCTCCATCCGATGCGCCGGAGATTCCCATTCTGCGTCTGTGGATTCCGAGTTCAACCCGAAGGTGTTTCGGAAGAATCTTACTAGGAGTAAGAATTATAACCGCAAAGGCTTTGGGTATAAGGAAGAGACCCTCCAACTCATGAATAGTGAATACACCAGTGACATCATTAAGACTTTGAAGGAAAATGGGTTCGAGTATACATGGGGTAATGTCACAGTGAAGCTGGCTGAAGCATTTGGATTCTGTTGGGGAGTTGAGAGGGCTGTTCAAATTGCTTACGAGGCCAGAAAACAGTTTCCTACTGAGACAATATGGCTCACCAATGAAATCATTCACAATCCTACCGTTTCTAAGGAAGTTGGTAAAAAAGTTTATTCGTGTCCTGAATTTGATGGTCGATTGCCGCCCTTTTTCTTGTACACACTGTTTTCTAATGTTCATGAGTTGTTAATGCAGAGGCTAGAGGATATGAAAGTGCAGAATCTTCCTCTGGAAGAAGGTTCTAAACAATTTGATGTCATCGACAGTGGTGATGTAGTCATATTGCCAGCTTTTGGAGCAGCAGTGGAAGAGATGTTGACTTTGAGTGAGAAAAATGTTCGGATTGTTGATACAACTTGTCCGTGGGTTGCAAAGGTTTGGAATTCCGTTGAAAAGCACAAGCAAGGAGATTATACCTCTGTAATTCATGGTAAATACGCCCATGAGGAAACTGTGGCAACTGCTTCTTTTGCTGGAAAATATATAATTGTGAAGAATATGTCAGAGGCTGAATATGTTTGTGACTATGTTCTTGGTGGTGAACTTAATGGGTCCAGTTCAACCAAAGAAGCATTGTTAGAGAAATTTAAATTTGCTGTTTCCAAGGGGTTTGATCCAGACAAGGACCTGCTAAAGCTTGGCATCGCAAATCAGACAACGATGCTCAAGGGAGAGACGGAAGAGATTGGGAAACTACTGGAGAGGACTATGATGCGCAAATATGGTGTGGAGAACGTCAACGAGCACTTCATGAGCTTCAACACAATTTGTGATGCTACACAGGAACGACAAGATGCTATGTACAAACTGGTGGAAGAAAATGTGGATCTTATATTAGTTGTTGGTGGATGGAACTCTAGCAATACATCACACCTGCAAGAAATAGCTGAGGAATATGGAATCCCTTCTTATTGGATTGACAGTGATCAAAGAATTGGTCCCGGAAACAAAATAGCACACAAGTTGAACCATGGAGAGCTAGTGGAGACAGAAAACTGGTTGCCAGAAGGTCCAATAACAATCGGTGTAACATCTGGTGCATCCACTCCAGACAAGGCTGTTGAAGATGCTCTCATCAAGATTTTTGACTTGAAACGTAAAGAAGCTATGCAACTTGTGTAG 1479 0.428 MAFSAHLCRLPASRADIALPESLTRIRCRKPFSIRCAGDSHSASVDSEFNPKVFRKNLTRSKNYNRKGFGYKEETLQLMNSEYTSDIIKTLKENGFEYTWGNVTVKLAEAFGFCWGVERAVQIAYEARKQFPTETIWLTNEIIHNPTVSKEVGKKVYSCPEFDGRLPPFFLYTLFSNVHELLMQRLEDMKVQNLPLEEGSKQFDVIDSGDVVILPAFGAAVEEMLTLSEKNVRIVDTTCPWVAKVWNSVEKHKQGDYTSVIHGKYAHEETVATASFAGKYIIVKNMSEAEYVCDYVLGGELNGSSSTKEALLEKFKFAVSKGFDPDKDLLKLGIANQTTMLKGETEEIGKLLERTMMRKYGVENVNEHFMSFNTICDATQERQDAMYKLVEENVDLILVVGGWNSSNTSHLQEIAEEYGIPSYWIDSDQRIGPGNKIAHKLNHGELVETENWLPEGPITIGVTSGASTPDKAVEDALIKIFDLKRKEAMQLV 492
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu5g02306 492 Gene3D - 373 491 - -
Vimu5g02306 492 NCBIfam 4-hydroxy-3-methylbut-2-enyl diphosphate reductase 181 480 IPR003451 GO:0019288|GO:0046872|GO:0050992|GO:0051745
Vimu5g02306 492 Pfam LytB protein 105 477 IPR003451 GO:0019288|GO:0046872|GO:0050992|GO:0051745
Vimu5g02306 492 Hamap 4-hydroxy-3-methylbut-2-enyl diphosphate reductase [ispH]. 103 484 IPR003451 GO:0019288|GO:0046872|GO:0050992|GO:0051745
Vimu5g02306 492 CDD lytB_ispH 105 480 IPR003451 GO:0019288|GO:0046872|GO:0050992|GO:0051745
Vimu5g02306 492 Gene3D - 239 372 - -
Vimu5g02306 492 PANTHER 4-HYDROXY-3-METHYLBUT-2-ENYL DIPHOSPHATE REDUCTASE, CHLOROPLASTIC 4 490 - -
Vimu5g02306 492 Gene3D - 114 238 - -
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu5g02306 K03527 - gmx:100818067 833.558
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu5g02306 5 34018590 34021368 Vimu5g02306 5 34018590 34021368 ECH