Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu5g02290 ATGGGTTTTGAAGAAGAAGCAGTTGTGCAATTGATCAATTCTGATTTCAGAGACCTAAGTGTAGCTGCTAATCAACTAGCCAATCACGTGGTCAAACTTGGTGGCATAGGCTTTGGAGCTTCTTTTTTCGGATTGATTGCTGCCATTGCTGCTATGGGAGAGATTGGAAAATGGATTGCTGTCATTGCTGTTGTATTGCGCCTTTTCATTCCAAGACACTTCCCTGGTATGATTGTTACTGCAGATTGGCTGGAATTGCCGGGTGCTTTGATTCTTCTTATCGTTGTAGCTCCTTCTCTATTTGCAAACACCTTTAGAAACAACATTGTTGGGGTGGTAGTGTGTCTCATCATTGCATGCTATCTGCTGCAAGAACATATTCGAGCTTCTGGTGGTTTTAGAAACTCCTTTACTAAAGCCCATGGGATATCGAATTCCATTGGCATAATACTTCTGTTGGTCTATCCCATCTGGGCGTTGGTGGTCATACTTTTTTAG 498 0.4237 MGFEEEAVVQLINSDFRDLSVAANQLANHVVKLGGIGFGASFFGLIAAIAAMGEIGKWIAVIAVVLRLFIPRHFPGMIVTADWLELPGALILLIVVAPSLFANTFRNNIVGVVVCLIIACYLLQEHIRASGGFRNSFTKAHGISNSIGIILLLVYPIWALVVILF 165
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu5g02290 165 PANTHER COLD-REGULATED 413 PLASMA MEMBRANE PROTEIN 2 53 162 IPR008892 GO:0016020
Vimu5g02290 165 ProSiteProfiles Ubiquitin-associated domain (UBA) profile. 1 29 IPR015940 -
Vimu5g02290 165 Pfam Cold acclimation protein WCOR413 4 52 IPR008892 GO:0016020
Vimu5g02290 165 Pfam Cold acclimation protein WCOR413 53 152 IPR008892 GO:0016020
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu5g02290 Vimu-Chr5 33912959 33915447 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu5g02290 - - gmx:100811430 225.328