Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu5g02283 ATGACTAACGCACAAGGCGGCTCCATGTTGGTGGAGCCAAACACACACAAGCCCTTACACAGACCCAAATTTGGAGCCTTGTTGCACTCCGAACCCATCAACAACGATGCCGATAACTTCCAATATAACCACCGCACCAACCCTACCCAGATGATGAACTACACCGATAGCAGCAATGATGTCTCTCCCTACTCCATGTCCCCATTGAACTACCCAAACCATTCTTCATCTCCTCTCAACAAGTCTCCATGGCTTTTACCCGCCTCACCCGCGATAAACCCCTTCCTCCACCACCACCAAGACCACCTCCCCGGCAACAGCCTCATCGGATCCCTCGTTCGCGAAGAGGGTCACATATATTCCTTGGCCGTTTCCGGTGACTTGTTATACACCGGCTCCGACAGCAAGAATATAAGAGTCTGGAAGCATCTCAAGGACTACACCGGCTTCAAATCAAGCAGTGGATTGGTTAAAACCATAATAATCGCCGGCGGGAAAATCTTCACCGGCCACCAAGACGGTAAGATCAGAGTGTGGAAGCTTTCCTCCAAGAATCCAAGCAAGCATAAACGCATCGGAAGCTTGCCAACCTTCAAAGATTACATGAAGTGTTCCATGAACCCCAAGAATTACGTGGAGGTTCGCCGCAACCGGAACGCGGTGAAGGTGAAGCACTTCGACGCCGTTTCGTCTCTCAGTCTGGACAAGGAGGAAGGGTTGCTGTACTCCGGGTCGTGGGACAAGACGGTCAAGGTGTGGCGCGTGGCGGATTTCAAGTGCTTGGAGTCGATCAACGCGCACGACGATGCGGTGAACGCGGTGGTGACGATGCCCGGAGGGTGCGTGTTGACGGGGTCAGCGGATGGGACGGTGAAGATGTGGAGGAGAGTGAGCGATGAGAAGGGGAAGAAGCCGAAGCATCTGTTGGGCAAGGTTTTGCTGAAGCAGGAGAACGCGGTTACGGCGCTGGCGGTGAACCGTGCGGGCACGGTGCTTTATTGCGGTTCCTCCGATGGAATGGTGAACTTCTGGGAGAATGACGAGAAGTGTGGGTTCACACACGGCGGCGTTTTGAGGGGTCACAAGCAAGCCGTGCTCTGCCTGGCCGTGGCGGGGAACCTTCTCTTCAGTGGGTCTGCCGATAAGAAAGTGTGCGTATGGAAGCGTGACGAGAGTGGGTTCCACACCTGCCATTCGGTTCTGACGGGTCACGTGGGTCCTGTTAAATGTATCGCCGTGGAGGAGGATCAGGCGCAACCGGAGAAGCCTCGCAACAAGAAAGATGATGAGCGGTGGATTGTGTATACGGGGAGCTTGGACAAGTCGGTGAAGGTGTGGCGCGTGTCCGAACAGGCGCCGGAGTTGAGCTCGTTCCAAACCTTGGCCAGTCCTGGTCCATTTACCACATAA 1410 0.5461 MTNAQGGSMLVEPNTHKPLHRPKFGALLHSEPINNDADNFQYNHRTNPTQMMNYTDSSNDVSPYSMSPLNYPNHSSSPLNKSPWLLPASPAINPFLHHHQDHLPGNSLIGSLVREEGHIYSLAVSGDLLYTGSDSKNIRVWKHLKDYTGFKSSSGLVKTIIIAGGKIFTGHQDGKIRVWKLSSKNPSKHKRIGSLPTFKDYMKCSMNPKNYVEVRRNRNAVKVKHFDAVSSLSLDKEEGLLYSGSWDKTVKVWRVADFKCLESINAHDDAVNAVVTMPGGCVLTGSADGTVKMWRRVSDEKGKKPKHLLGKVLLKQENAVTALAVNRAGTVLYCGSSDGMVNFWENDEKCGFTHGGVLRGHKQAVLCLAVAGNLLFSGSADKKVCVWKRDESGFHTCHSVLTGHVGPVKCIAVEEDQAQPEKPRNKKDDERWIVYTGSLDKSVKVWRVSEQAPELSSFQTLASPGPFTT 469
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu5g02283 469 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 222 255 - -
Vimu5g02283 469 ProSiteProfiles Trp-Asp (WD) repeats profile. 222 263 IPR001680 GO:0005515
Vimu5g02283 469 MobiDBLite consensus disorder prediction 1 22 - -
Vimu5g02283 469 Gene3D - 217 305 IPR015943 GO:0005515
Vimu5g02283 469 ProSiteProfiles Trp-Asp (WD) repeats profile. 313 345 IPR001680 GO:0005515
Vimu5g02283 469 SMART WD40_4 219 254 IPR001680 GO:0005515
Vimu5g02283 469 SMART WD40_4 351 388 IPR001680 GO:0005515
Vimu5g02283 469 SMART WD40_4 394 447 IPR001680 GO:0005515
Vimu5g02283 469 SMART WD40_4 143 180 IPR001680 GO:0005515
Vimu5g02283 469 SMART WD40_4 105 142 IPR001680 GO:0005515
Vimu5g02283 469 SMART WD40_4 306 345 IPR001680 GO:0005515
Vimu5g02283 469 SMART WD40_4 257 295 IPR001680 GO:0005515
Vimu5g02283 469 CDD WD40 116 447 - -
Vimu5g02283 469 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 264 294 - -
Vimu5g02283 469 FunFam BnaA09g28200D protein 212 299 - -
Vimu5g02283 469 ProSiteProfiles Trp-Asp (WD) repeats profile. 358 388 IPR001680 GO:0005515
Vimu5g02283 469 Gene3D - 306 463 IPR015943 GO:0005515
Vimu5g02283 469 SUPERFAMILY WD40 repeat-like 107 453 IPR036322 GO:0005515
Vimu5g02283 469 ProSiteProfiles Trp-Asp (WD) repeats profile. 264 294 IPR001680 GO:0005515
Vimu5g02283 469 PANTHER F-BOX AND WD40 DOMAIN PROTEIN 56 452 IPR045182 -
Vimu5g02283 469 PRINTS G protein beta WD-40 repeat signature 282 296 IPR020472 -
Vimu5g02283 469 PRINTS G protein beta WD-40 repeat signature 241 255 IPR020472 -
Vimu5g02283 469 PRINTS G protein beta WD-40 repeat signature 167 181 IPR020472 -
Vimu5g02283 469 Pfam WD domain, G-beta repeat 356 388 IPR001680 GO:0005515
Vimu5g02283 469 Pfam WD domain, G-beta repeat 318 344 IPR001680 GO:0005515
Vimu5g02283 469 Pfam WD domain, G-beta repeat 397 446 IPR001680 GO:0005515
Vimu5g02283 469 Pfam WD domain, G-beta repeat 116 142 IPR001680 GO:0005515
Vimu5g02283 469 Pfam WD domain, G-beta repeat 225 253 IPR001680 GO:0005515
Vimu5g02283 469 Pfam WD domain, G-beta repeat 259 294 IPR001680 GO:0005515
Vimu5g02283 469 Gene3D - 102 216 IPR015943 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu5g02283 Vimu-Chr5 33882165 33883964 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu5g02283 223 469 Miscellaneous Gene Families AT5G08390 26.000 2.60e-09 57.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu5g02283 - - gmx:100807706 706.442