Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu5g02272 ATGATGCCTCACCAAAACGGGATTCCCCCACTAGTCACTGCAGTAAAATCTTCAGCCGAAAAAAATGCAGCTAGTTTTCACTTTCCTGGACACAACAGAGGGCATGCTGCACCTGCTTCCATGACTGCGCTCATTGGAAGAAAACCCTTTCTTCATGACTTGCCTGTGCTTCGTGAGCTTGGCAATCTCTTTTGTCCCTACGGTCCCATATTAGAAGCACAGCTTGAAGCAGCAAAACTCTTTGGATCCTCGTACACACGGTCTCTTGTCGGAGGTACAACTTCTGGAATCCAGGCCGCCATAATGGCAACATGTTCTCCTGGGGAACTTCTCATTCTTCCAAGGAATTCTCATATATCAGCTATATCTGCTGTGGTATTATCTGGTGCAGTGCCTAAGTACATCATTCCTCACATTCTCAATGATTGGGACATTGCTGCTGCTGTCACTGCATCTCAGGTATTGCAAGCTATCCGGGAAGTAGAAATGGAAGGGAAAAAAGCAGCAGCAGTGTTCATCACTTCACCAACTTATCATGGCCTTTGCAATGACTTGAGCAGGATTTCTGAGCTGTGTCACTCTCATGAAATCCCTTTGATTGTTGATGAAGCTCATGGCGCACATTTTGGATTTCATTCTAAACTGCCTAAGTCAGCTCTCCAGCAAGGTGCCGATCTCATCGTGCAGTCCACTCACAAAGTTTTATGCTCTCTTACACAGTCATCCATGCTGCACATGTCAGGCAACATTGTAGACAAGGACAGAGTTTCTGCATGTCTCCGAACTCTCCAAACCACAAGCCCTAGTTTTCTGCTTCTGACATCCCTTGATGCTGCTAGAGCTCAACTCAGTGAGAACCCTGATACTGTATTCAACCAAGCAATTGCGTTAGCCGATGAAACAAAATCTGTGCTAAAACAAATACCTGGTATCTCAGTACTTGATAATGCAAGCTTTCCAGCCTCTCCTGCAGTTGATCCATTGCGTCTCACTGTAGGGTTTTGGAATCTTGGTTTATCAGGTTCCGAAGGAGATGAAATGTTATACAAGGATTATGAAGTCATATGTGAACTCGTTGGGAATAGATCAATAACTTATGTACTTAATCTTGGAACTTGTAGGGAGCATATCGACAGGCTTGTGTTGGGTATTAAGCGTTTGGCTGTAACATATGGTTCCATTGGAAAAGCAGAGAAGAAAGTGGTGAATGTTCATGCACCCTTTGATGATATAATAATGAGTATGATCCCTAGAGATGCGTTTTTTGCAAGTAAAAGAAAAGTGGCAATAAGAGAGAGCATTGGTGAGGTTGCAGGGGAGATTATATGTCCCTACCCTCCTGGTGTACCAGTATTGATCCCTGGTGAGGTTGTTACTGAAAAAATTGTTGATTATCTGCTTCTTGTTACAAGTAAAGGTGCTGAAGTTAATGGAGCATCTGACTCCTCGCTTTCTTCGATAGTTGTTTGTGGTAAATTAGCAGCTGGGAAGGAGCACCCTTGA 1503 0.4385 MMPHQNGIPPLVTAVKSSAEKNAASFHFPGHNRGHAAPASMTALIGRKPFLHDLPVLRELGNLFCPYGPILEAQLEAAKLFGSSYTRSLVGGTTSGIQAAIMATCSPGELLILPRNSHISAISAVVLSGAVPKYIIPHILNDWDIAAAVTASQVLQAIREVEMEGKKAAAVFITSPTYHGLCNDLSRISELCHSHEIPLIVDEAHGAHFGFHSKLPKSALQQGADLIVQSTHKVLCSLTQSSMLHMSGNIVDKDRVSACLRTLQTTSPSFLLLTSLDAARAQLSENPDTVFNQAIALADETKSVLKQIPGISVLDNASFPASPAVDPLRLTVGFWNLGLSGSEGDEMLYKDYEVICELVGNRSITYVLNLGTCREHIDRLVLGIKRLAVTYGSIGKAEKKVVNVHAPFDDIIMSMIPRDAFFASKRKVAIRESIGEVAGEIICPYPPGVPVLIPGEVVTEKIVDYLLLVTSKGAEVNGASDSSLSSIVVCGKLAAGKEHP 500
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu5g02272 500 PANTHER ARGININE DECARBOXYLASE 6 490 - -
Vimu5g02272 500 Gene3D - 9 289 IPR015421 GO:0003824
Vimu5g02272 500 Pfam Orn/Lys/Arg decarboxylase, major domain 9 309 IPR000310 GO:0003824
Vimu5g02272 500 SUPERFAMILY Ornithine decarboxylase C-terminal domain 347 491 IPR036633 GO:0003824
Vimu5g02272 500 Gene3D - 394 489 - -
Vimu5g02272 500 Pfam Orn/Lys/Arg decarboxylase, C-terminal domain 415 473 IPR008286 GO:0003824
Vimu5g02272 500 SUPERFAMILY PLP-dependent transferases 9 387 IPR015424 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu5g02272 Vimu-Chr5 33816983 33818694 Tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu5g02272 - - vum:124823144 756.903