Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu5g02271 ATGATGATGTCTACCACACTCTCAGTCTCTTTCTCTTGTAATCCCCAAAACCCTAAATCGCTTTGCTTTCTTCCTTTGCAGGACTTTCCCAACACTTCCACTCTCAGGGTTTTGCCAACACTTCCGCTTCGCTGTTCTCAGGAAAGAAGCCTTGCACCACCCCCAACTGGGCTGGATGAAAACATTGGGGGTTTATCAGCCTCAAACGACTGCGTTTTGAGCGGCAATACACCGGTGCTTCGGCAAAATGGCCTACCTCCTCTGGTCAGTGCATTGAAAGCTTCTGCTGAGCAAAATGTTGCCAGTTTTCACTTTCCTGGACATAACAGAGGGCGTGCTGCTCCTGCTTCCTTGACTCGGCTCATTGGAACAAGACCCTACTTGCATGATTTACCCGAGCTTCCAGAGCTTGACAACCTCTTTTGTCCTCAGGGGCCCATATTAGAAGCACAGATTGAAGCGGCCAAACTGTTTGGATCATCACATACATGGTTTCTGGTTGGAGGTACTACTTGTGGGATTCAGGCAGCCATTATGGCTACCTGTTCCCCCGGAGAATTTCTGATTCTTCCAAGGAATTCCCATATATCAGCTATATCTGCTATGGTATTGTCTGGTGCAGTGCCTAAGTACATTGTTCCCGACTATGAGAATGATTGGGACATTGCTGGTGGTGTCACTCCATTACAGGTATTGAAAGCCATCCAGGGATTAGAAATGGAAGGGAAAAAAGCGGGAGCGGTCTTCATCACCTCGCCTACTTATCATGGTATTTGCAGTGATGTAAGCAGGATTTCTGAGCTGTGTCATTCTCGTAAAATTCCTTTGATTGTTGATGAAGCTCACGGGGCACATTTTGGATTCCATTCTGAACTACCTAACTCAGCCCTCCAGCAAGGGGCTGATCTGACTGTACAATCAACTCACAAAGTTCTATGCTCTCTTACTCAGTCATCTATGCTGCACATGTCAAGAAATATTGTAGATAAGGAAAAAATTGATAGATGTCTCCAAACTCTTCAAACTACAAGCCCTAGCTATCTGCTTTTGGCATCCCTGGATGCTGCCAGAGCTCAACTTAGTGAACGCCGTGATGTTGTATTCAACCAAGCAATTGCATTAGCTTATGAAGCAAAGTACACGCTAAAACAAATTGCTGGTATATCAGTGCTTGAGAATTCAAGCTTTTCATCCTTTCCTGCAATTGATCCATTGCGTCTCACTGTGGGCTTTTGGAAGCTTGGTCTATCAGGTTACGAAGCTGACGAAATCTTATACAGAGATTATGGTGTTATCTGCGAACTTGTTGGGAACAAATCTATTACTTACGCATTTAATCTCGGGACTTGTAGGGACCATGTCCAAAGACTTCTCTTGGGAATAAAGCATTTGGCTGCAACATATTCTTCCATTCAGCAACCTGAAGAGAAAGTGTGTGATGTTCATGCACCCTTTGATGATATAATAATGAGTTTAATCCCCAGAGATGCCTTTTTTGCTAGTAAAAGAAAAGTAACAATAAGGGAGAGCATTGGTGAGGTTTCAGGGGAGCTTGTATGTCCATATCCTCCGGGCATACCAGTATTGATCCCTGGTGAGGTTATTACCGAAAGAGCTGTTGATTATCTTCTACATGTTAGGAGTAAAGGTGCTGATATTAGTGGGGCATCTGATCCCTTACTTTCTTCAGTAGTTGTCTGCAACATAAAGTAA 1713 0.4407 MMMSTTLSVSFSCNPQNPKSLCFLPLQDFPNTSTLRVLPTLPLRCSQERSLAPPPTGLDENIGGLSASNDCVLSGNTPVLRQNGLPPLVSALKASAEQNVASFHFPGHNRGRAAPASLTRLIGTRPYLHDLPELPELDNLFCPQGPILEAQIEAAKLFGSSHTWFLVGGTTCGIQAAIMATCSPGEFLILPRNSHISAISAMVLSGAVPKYIVPDYENDWDIAGGVTPLQVLKAIQGLEMEGKKAGAVFITSPTYHGICSDVSRISELCHSRKIPLIVDEAHGAHFGFHSELPNSALQQGADLTVQSTHKVLCSLTQSSMLHMSRNIVDKEKIDRCLQTLQTTSPSYLLLASLDAARAQLSERRDVVFNQAIALAYEAKYTLKQIAGISVLENSSFSSFPAIDPLRLTVGFWKLGLSGYEADEILYRDYGVICELVGNKSITYAFNLGTCRDHVQRLLLGIKHLAATYSSIQQPEEKVCDVHAPFDDIIMSLIPRDAFFASKRKVTIRESIGEVSGELVCPYPPGIPVLIPGEVITERAVDYLLHVRSKGADISGASDPLLSSVVVCNIK 570
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu5g02271 570 Gene3D - 86 366 IPR015421 GO:0003824
Vimu5g02271 570 Pfam Orn/Lys/Arg decarboxylase, C-terminal domain 503 549 IPR008286 GO:0003824
Vimu5g02271 570 SUPERFAMILY PLP-dependent transferases 86 464 IPR015424 -
Vimu5g02271 570 Pfam Orn/Lys/Arg decarboxylase, major domain 86 389 IPR000310 GO:0003824
Vimu5g02271 570 SUPERFAMILY Ornithine decarboxylase C-terminal domain 424 567 IPR036633 GO:0003824
Vimu5g02271 570 CDD Orn_deC_like 87 384 IPR000310 GO:0003824
Vimu5g02271 570 Gene3D - 467 566 - -
Vimu5g02271 570 PANTHER ARGININE DECARBOXYLASE 75 568 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu5g02271 Vimu-Chr5 33810128 33813637 Tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu5g02271 - - vum:124823144 1011.91