Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu5g02266 ATGATTTCCCAATCTTTTACCAGGGCCATTCGCCATCCAGCAAGTGGATATGTTCAGGGGATAAATGATCTTGTTACACCGTTCTTGGTTGTTTTCTTATCAGAGTATTTTGAAGGGGATATAGATAATTGGTCAATGTCTGATTTATCTCCAGATACAATCTCTAATGTAGAGGCAGACTGCTACTGCTGCTTGTCAAAGTTGCTTGATGGTATGCAAGATCATTACACATTCGCTCAACCTGGAATTCAGAGGCTTGTTTTTAAGTTGAAGGAATTGGTCACGAGGATTGATGCTGCACCAGAGCCTGTTTCGCGACACTTGGAGGATCAGGGACTTGATTTTCTTCAGTTTGCTTTCCGCTGGTTCAACTGTCTTCTCATCCGTGAGTGGTCTGACAAGCTCCAGAAATTTGATTTCCAAGAATTGGTAATGTTCCTTCAGAACCTCCCGACAGAGAATTGGACTCACCAGGAGCTTGAGATGGTGCTTTCACGAGCATTTATGTGGCACACCATGTTCAACAACTCTCCCAGCCATTTAATTAGCTAA 552 0.4293 MISQSFTRAIRHPASGYVQGINDLVTPFLVVFLSEYFEGDIDNWSMSDLSPDTISNVEADCYCCLSKLLDGMQDHYTFAQPGIQRLVFKLKELVTRIDAAPEPVSRHLEDQGLDFLQFAFRWFNCLLIREWSDKLQKFDFQELVMFLQNLPTENWTHQELEMVLSRAFMWHTMFNNSPSHLIS 183
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu5g02266 183 SUPERFAMILY Ypt/Rab-GAP domain of gyp1p 80 171 IPR035969 -
Vimu5g02266 183 PANTHER TBC1 DOMAIN FAMILY MEMBER GTPASE-ACTIVATING PROTEIN 7 137 - -
Vimu5g02266 183 SUPERFAMILY Ypt/Rab-GAP domain of gyp1p 7 98 IPR035969 -
Vimu5g02266 183 ProSiteProfiles TBC/rab GAP domain profile. 1 149 IPR000195 -
Vimu5g02266 183 Gene3D - 132 183 - -
Vimu5g02266 183 Gene3D - 79 131 - -
Vimu5g02266 183 Pfam Rab-GTPase-TBC domain 9 133 IPR000195 -
Vimu5g02266 183 Gene3D putative rabgap domain of human tbc1 domain family member 14 like domains 6 78 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu5g02266 Vimu-Chr5 33789821 33791945 Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu5g02266 K20360 - gmx:100819281 312.383