Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu5g02264 ATGGCAGTCAACGACGCCGATCAATCTAACAGGCCTCACAGGAATCGCCAATCCGGTTCCAAATCCGCCAAGAAGAAGAGTAAGAAGAAGCAGAATCAGGATGTCGGAGGAGAGGATCAGAAAAACCAAAACCCTAAGGCATTCGCCTTTTCTTCCTCCAACAAAGCCAAAAGGTTGCAATCACGTGCCGTGGAGAAAGAGCAGCGCCGCCTTCACGCTCCCATCATTGACCGCTCCTACGGCGAACCCGCTCCATACGTCGTAGTCGTGCAGGGTCCTCCTCAGGTTGGGAAGTCACTGTTGATTAAATCTTTGGTTAAGCATTACACGAAACATAATTTGCCCGATGTTCGAGGTCCAATTACCATTGTCTCAGGAAAGCAAAGGCGGGTTCAGTTTGTGGAATGCCCGAATGATATCAATGGCATGATAGACGCGGCAAAGTTTGCAGATCTAGCGCTACTTCTCATAGATGGGAGTTATGGTTTTGAAATGGAAACCTTTGAGTTCCTAAATATATTGCAAGTTCATGGGTTCCCAAAGGTCATGGGGGTTCTCACCCATCTTGATAAATTTAAGGACGTGAAAAAGTTGAGGAAAACAAAACAAAGACTTAAACACCGTTTCTGGACGGAGATATATGATGGTGCTAAACTATTTTACTTATCAGGCCTAATTCATGGGAAGTATGTTAAGCGGGAGGTGCACAATCTTGCTAGATTTATTTCAGTCATGAAGTTTCATCCTTTATCTTGGCGAACTTCCCACCCCTATGTTTTAGTTGACCGTTTTGAAGACATCACTCCTCCTGAAAAAGTGCATGCAAATGATAAATGTGACAGAAAAGTCACCCTTTATGGTTATCTTAGAGGATGTAATTTGAAAAAGGGCAATAAGGTACACATAGCAGGAGTGGGTGATTATAGTTTAACTGCTATTACTGCTTTACCGGATCCTTGTCCTCTCCCATCTGCTGCAAAAAAGAAAGGGCTGCGGGATAAGGAAAAATTATTCTATGCTCCTATGTCTGGACTTGGGGATCTTTTGTATGACAAAGATGCTGTATATATAAATATTAACGACCACCTTGTTCAATTCTCAAAAGTTGATGGTGAAGGCTCTGCTATGACAAGCAAAGGAAAGGACAGAGATGTAGGTGAGCTTTTAGTGAAATCCCTGCAGAATACCAAATACTCGATCAATGAAAAGCTGGAGAACAGCTCTATCAGTTTTTTTGGTGAAAAGCCTAAAGTGTCATCAGAAGCTCTGACTGACTCACATGGTCAAAACAAGGATGTAGAACAGAATGAAGCTGCTATAAACACAAAGGATTCAGATGGTTCAGAATCATCTGATCAGGATGAAGAGGACACCATGAAAGAGGGTGAAGCCTCTGATTCCGACAATGAAGATTCACCAAATAGCAATGCTTTGAATGGAGACCAAATACAAGAACATATCGAGTTTCATGATGGAAGACGAAGGCGGAGAGCGATATTTGGAAATGATATTGATCAAAGCGATGTGATGGATTCAGAAGGAGACGAGGATGCTGCTGCAAGTGATGATCTTGCATCTTCTAATTCAGAATCTTCAGAAGAAGAGGAGGAAGATGATAATGATAATGATGACACAAACGTACCAGGTCTAGAAAATGGCATGGGTAATGTTTCCAAGTGGAAAGAGTCTTTGGCAGAAAGAACTCTTTCACGGAAAGCTCCTAGCTTGATGCAACTTGTGTATGGGGAATCTACTAACAATTCAACCACAGCAAACTCTGAGAATGATAATAGTGGAGATGAGGAAAGTGATGATGACTTTTTTAAGCCCATAGAAGAAGTGAAAAAGCAAAGCATGAGAGATGGATTGGATGATGATGGAATGGTCAACACTGAGGATTGTTCCAAGTGCGCACAATTTGTGCATCAGAGATGGGATGAGGAGATTCGTAACCGCTTTGTGTCTGGCAATTTGGCAAAAGCTGCACTCAGAAATGCATTACAAACAGAAAATACTGAAGGGGAAAATGAAGATGTCTTTGGGGACTTCGAAGATTTGGAAACAGGAGAAAAACATGAGAATAATCAGACAGATGATGCTCTTGCAGCAACAACACTAAAGGGTGATGATTTGGAAGCTGAGGAGCGTAGGCTTAAGAAACGTGCTCTCCACCCTGGGTCACCAGAAGAAGACACTGATGATGAAAGTGAACGCAAGTTCCATCGTGGTCAAGCTAATGAAAGTAGCTATTTTGACAAGTTGAAGGAGGAAATTGAACTCCAGAAACAAAGGAATATAGCCGAACTCAATGATCTTGATGAAGATACCCGATTGGAGATAGAAGGGTTCCGAACAGGGACATACCTAAGATTGGAGATTGATGATGTTCCTTGCGAGATGGTTGAATACTTTGATCCCTACCATCCAATATTGGTTGGAGGGGTTGGTATAGGGGAGGAAAATGTTGGATATATGCAGACAAGGTTAAAGCGGCACAGGTGGCACAAGAAAGTTTTGAAGACTAGAGATCCAATCATTGTATCTGTTGGATGGAGGCGTTACCAGACAACCCCAGTTTATGCCATTGAGGATACCAATGGAAGGCATCGAATGCTTAAGTACACTCCGGAACACATGCATTGCCTTGCTATGTTTTGGGGCCCTCTTGCTCCTCCCAACACTGGGGTTGTAGCTGTTCAGAATTTAGCAAACAATCAGGCAACATTTAGGATTACTGCCACTGCAGTTGTGCTCGAGTTTAATCATGCAGCAAGGATAGTGAAGAAAATCAAATTGGTTGGTTATCCATGCAAGATATTCAAGAAGACAGCACTTATCAAGGACATGTTTACTTCGGATCTTGAAGTAGCTCGGTTTGAAGGTGCAGCTATTCGAACAGTCAGCGGGATTAGGGGCCAGGTCAAGAAGGCCGCAAAAGAAGAAATAGGTAATCAAGCAAAAAAGAAGGGTGGGCAAACTAAAGAAGGAATCGCTAGGTGCACTTTTGAGGATAAAATCCTGATGAGTGACATTGTTTTCCTGCGTGCATGGACTCAAGTTGAAGTTCCTCAGTTTTATAATCCATTGACAACTGCATTGCAGCCTCGTGAAAAGACCTGGAAAGGAATGAGGACCGTTGCAGAATTGAGAAGAGAACACAATCTTCCTGTTCCTGTAAATAAAGATTCACTTTACAAGAAAATTGAAAGAAAACCTAGAAAGTTCAATCCATTGGTGATTCCCAAGTCTCTTCAAGCAAGTCTTCCCTTTGCATCAAAACCCAAGGATATACCCAAACGAAAGAAGCCCTTACTTGAAGAGAGAAGGGGAAGGGGTGTTGTCATGGAACCTCGAGAGCGCAAAGTTCATGCTCTTGTTCAACATCTCCAGTTAATAAATAGCGAGAAGATGAAAAAGCGAAAGCTTAAGGAAGAGAAGAAAAGGAAAGAACTAGAAGCAGAGAGAGCAAAAGACGAGCAGTTGTCGAGGAAGCGCCGGAGAGAGGAAAGACGTGAGAAATACCGGGCACAAGACAAACAGCATAAGAAAATTCGAAGAGCAGAGGTTTGA 3570 0.4255 MAVNDADQSNRPHRNRQSGSKSAKKKSKKKQNQDVGGEDQKNQNPKAFAFSSSNKAKRLQSRAVEKEQRRLHAPIIDRSYGEPAPYVVVVQGPPQVGKSLLIKSLVKHYTKHNLPDVRGPITIVSGKQRRVQFVECPNDINGMIDAAKFADLALLLIDGSYGFEMETFEFLNILQVHGFPKVMGVLTHLDKFKDVKKLRKTKQRLKHRFWTEIYDGAKLFYLSGLIHGKYVKREVHNLARFISVMKFHPLSWRTSHPYVLVDRFEDITPPEKVHANDKCDRKVTLYGYLRGCNLKKGNKVHIAGVGDYSLTAITALPDPCPLPSAAKKKGLRDKEKLFYAPMSGLGDLLYDKDAVYININDHLVQFSKVDGEGSAMTSKGKDRDVGELLVKSLQNTKYSINEKLENSSISFFGEKPKVSSEALTDSHGQNKDVEQNEAAINTKDSDGSESSDQDEEDTMKEGEASDSDNEDSPNSNALNGDQIQEHIEFHDGRRRRRAIFGNDIDQSDVMDSEGDEDAAASDDLASSNSESSEEEEEDDNDNDDTNVPGLENGMGNVSKWKESLAERTLSRKAPSLMQLVYGESTNNSTTANSENDNSGDEESDDDFFKPIEEVKKQSMRDGLDDDGMVNTEDCSKCAQFVHQRWDEEIRNRFVSGNLAKAALRNALQTENTEGENEDVFGDFEDLETGEKHENNQTDDALAATTLKGDDLEAEERRLKKRALHPGSPEEDTDDESERKFHRGQANESSYFDKLKEEIELQKQRNIAELNDLDEDTRLEIEGFRTGTYLRLEIDDVPCEMVEYFDPYHPILVGGVGIGEENVGYMQTRLKRHRWHKKVLKTRDPIIVSVGWRRYQTTPVYAIEDTNGRHRMLKYTPEHMHCLAMFWGPLAPPNTGVVAVQNLANNQATFRITATAVVLEFNHAARIVKKIKLVGYPCKIFKKTALIKDMFTSDLEVARFEGAAIRTVSGIRGQVKKAAKEEIGNQAKKKGGQTKEGIARCTFEDKILMSDIVFLRAWTQVEVPQFYNPLTTALQPREKTWKGMRTVAELRREHNLPVPVNKDSLYKKIERKPRKFNPLVIPKSLQASLPFASKPKDIPKRKKPLLEERRGRGVVMEPRERKVHALVQHLQLINSEKMKKRKLKEEKKRKELEAERAKDEQLSRKRRREERREKYRAQDKQHKKIRRAEV 1189
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu5g02264 1189 Coils Coil 1125 1171 - -
Vimu5g02264 1189 MobiDBLite consensus disorder prediction 449 464 - -
Vimu5g02264 1189 MobiDBLite consensus disorder prediction 37 58 - -
Vimu5g02264 1189 MobiDBLite consensus disorder prediction 608 627 - -
Vimu5g02264 1189 SMART DUF663_2 693 1020 IPR007034 -
Vimu5g02264 1189 MobiDBLite consensus disorder prediction 528 545 - -
Vimu5g02264 1189 FunFam BMS1 ribosome biogenesis factor 86 248 - -
Vimu5g02264 1189 SMART aarp2cn2 234 320 IPR012948 GO:0005634|GO:0042254
Vimu5g02264 1189 PANTHER RIBOSOME BIOGENESIS PROTEIN 6 1171 IPR039761 GO:0042254
Vimu5g02264 1189 Pfam AARP2CN (NUC121) domain 234 319 IPR012948 GO:0005634|GO:0042254
Vimu5g02264 1189 Gene3D - 86 248 IPR027417 -
Vimu5g02264 1189 Pfam 40S ribosome biogenesis protein Tsr1 and BMS1 C-terminal 710 1021 IPR007034 -
Vimu5g02264 1189 CDD BMS1 47 276 IPR037875 GO:0005525
Vimu5g02264 1189 MobiDBLite consensus disorder prediction 1 68 - -
Vimu5g02264 1189 Coils Coil 755 775 - -
Vimu5g02264 1189 MobiDBLite consensus disorder prediction 579 596 - -
Vimu5g02264 1189 MobiDBLite consensus disorder prediction 420 627 - -
Vimu5g02264 1189 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 84 222 IPR027417 -
Vimu5g02264 1189 MobiDBLite consensus disorder prediction 717 746 - -
Vimu5g02264 1189 MobiDBLite consensus disorder prediction 1135 1189 - -
Vimu5g02264 1189 MobiDBLite consensus disorder prediction 484 502 - -
Vimu5g02264 1189 ProSiteProfiles Bms1-type guanine nucleotide-binding (G) domain profile. 84 248 IPR030387 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu5g02264 Vimu-Chr5 33773473 33781418 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu5g02264 K14569 - gmx:100792176 1926.37