Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu5g02257 ATGCCTCGTTACAAGGACGAGTCTCCTGCAGTTCGGGTTTACACTGTCTGTGATGAATCCAGATATTTGATTGTGAGGAACGTTCCAGAATTAGGATGTGGTGATGATTTGCTGCAACTTTTTTCATCCTATGGAGAAGTCGAGGAGTGTAAGCCCATGGATGCAGAAGACTGTGAGAAATACACTGATGTCTATTGGATCAAATTCCGCCTTGTCAGCAATGCTAGGTTTGCAAAAAGAAAATTGGATGATTTTGTTTTCTTCGGGAATAAACTGCAGGTTTCATATGCCCCGCAATTCGAGAGCCTATCAGATACACAAGATAAATTAGAGGGAAGAAGAAGGGAGGTTTTAGCGCGATTGAACCGTAAGTTAGAGCAATTGAGCGGTAGCACACTACACACAGCTAGAAGATCTAAAGAGACCCTAGCCACAAGCTCTAAAGAGACCCCAGCCACGAGCTCTGATGCTATGATTACATCAAATGTCAATAGTGCACAACATTTAGATTCTAATGCTTGGGATGTAGAATTCAAAGGAGGTTCACGCAGTAGTAATTTTCCAACAAGGATTTCCTCTAATGAGGTTTGTTGCTTCTTTATATGTGCACATTCCAAGTTTACGCTATTATTAGCTGTTTTGCAATATGACAGGGCCTTAATTGGTGGATCTGATATTATAGTTTCCCAAACTATTATACTTAATAAATTTGCTCTAAGACGTTCTGTGCAAAAAAAAAAATGGACACTTGCTTTTCGTATATTACCTCATCCTAACATGTTATATTTCCAGGATTATTTTGCTTCACAGTCCATGAATCGAACTGTAAATTTTGTACGGGATAAGCTTGATAAGATTCGATCAAGTGGTGAGCATACACAAGCTGGATCTGCGTCCAAGAAACAGCGGGTTGATAATAGGAGGAGAATTTAA 933 0.3966 MPRYKDESPAVRVYTVCDESRYLIVRNVPELGCGDDLLQLFSSYGEVEECKPMDAEDCEKYTDVYWIKFRLVSNARFAKRKLDDFVFFGNKLQVSYAPQFESLSDTQDKLEGRRREVLARLNRKLEQLSGSTLHTARRSKETLATSSKETPATSSDAMITSNVNSAQHLDSNAWDVEFKGGSRSSNFPTRISSNEVCCFFICAHSKFTLLLAVLQYDRALIGGSDIIVSQTIILNKFALRRSVQKKKWTLAFRILPHPNMLYFQDYFASQSMNRTVNFVRDKLDKIRSSGEHTQAGSASKKQRVDNRRRI 310
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu5g02257 310 FunFam RNA-binding protein 48 isoform X4 16 117 - -
Vimu5g02257 310 CDD RRM_RBM48 11 110 IPR034264 -
Vimu5g02257 310 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 23 92 IPR000504 GO:0003723
Vimu5g02257 310 SUPERFAMILY RNA-binding domain, RBD 8 101 IPR035979 GO:0003676
Vimu5g02257 310 MobiDBLite consensus disorder prediction 289 310 - -
Vimu5g02257 310 Gene3D - 16 114 IPR012677 -
Vimu5g02257 310 PANTHER UNCHARACTERIZED 3 310 IPR039599 -
Vimu5g02257 310 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 21 99 IPR000504 GO:0003723
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu5g02257 K24824 - gmx:100527829 293.508