Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu5g02255 ATGGCCAATGGCAGCACTACCCAGTTGTTCAAGCTTCTGCTTTTCCTTCTGATTCTTCACTCTGCACTCGCTGAGATCTTCTTCGAAGAGAGATTTGAAGATGGATGGAAGAGCCGTTGGGTTTTGTCGGACTGGAAAAGGAGCGAGGGAAAAGCAGGTACCTTCAAGCACACAGCAGGGAAATGGTCTGGAGATCCTGATGACAAAGGTCTTCAGACACATAACGATGCCAAACATTTTGCCATATCTGCAAAGATACCCGAGTTTAGCAACAAGGACAGAACCCTTGTGGTGCAGTATTCCATTAGGTTTGAGCAGGACATTGAATGCGGTGGCGGTTACATCAAACTTCTCTCTGGTTATGTCAATCAGAAGAAGTTTGGTGGTGATACCCCTTATAGTTTGATGTTTGGACCAGATATATGTGGCACACAGACTAAGAAGCTCCATCTTATACTATCATACCAAGGGCAGAATTACCCTATTAGGAAGGAACTCCAATGTGAAACGGATAAATTGACTCATTTCTATACATTTATTTTAAGGCCTGATGCCTCTTATAGTATCCTTGTTGATAACCGGGAAAGAGATTCGGGAAGCATGTATGCAGATTGGGACATCCTTCCTCCGAGGAAAATCAAGGATGTCAAAGCAAAAAAACCAGCAGACTGGGATGATAGAGAGTACATTGAAGATCCTAATGATGTCAAACCAGAGGGATATGATTCAATTCCAGCTGAAATTCCTGATCCAAAAGCCAAGAAGCCTGCTAACTGGGATGATGATGATGATGGACTATGGAAGCCCTCAAAGGTTCCTAATCCAGCATACAAAGGACCATGGAAACGCAAGAAAATCAAGAATCCCAACTACAAAGGAAAGTGGAAGATTCCATGGATTGATAACCCAGAATTTGAGGATGATCCCGATCTTTATGTTCTCAAGCCAATTAAGTATGTGGGCATTGAAGTGTGGCAGGTGAAGGCAGGTTCAGTTTACGACAACATCTTAATTTGTGATGATCCGCAGTATGCAAAGCAGGTTGTGGATGAATTTATGGCTAACAATAAAGAGTCCGAAAAAGAAGCTTTTGAAGAAGCAGAAAAAGAAAGAAGGGCTAGGGAAGAAGAGGTGACCATTCAAAGCCTAAATGCTTCAGCAGAGGCACAGAGAGCACGAGAAGAGGGTGAAAAAAGGAGAAAGGAGAGGGATCATAAATATGGAAACAGGAGGCGGCGTCGAAGGCCGGATCCCCACGATATGTATGATTACCAT 1275 0.4329 MANGSTTQLFKLLLFLLILHSALAEIFFEERFEDGWKSRWVLSDWKRSEGKAGTFKHTAGKWSGDPDDKGLQTHNDAKHFAISAKIPEFSNKDRTLVVQYSIRFEQDIECGGGYIKLLSGYVNQKKFGGDTPYSLMFGPDICGTQTKKLHLILSYQGQNYPIRKELQCETDKLTHFYTFILRPDASYSILVDNRERDSGSMYADWDILPPRKIKDVKAKKPADWDDREYIEDPNDVKPEGYDSIPAEIPDPKAKKPANWDDDDDGLWKPSKVPNPAYKGPWKRKKIKNPNYKGKWKIPWIDNPEFEDDPDLYVLKPIKYVGIEVWQVKAGSVYDNILICDDPQYAKQVVDEFMANNKESEKEAFEEAEKERRAREEEVTIQSLNASAEAQRAREEGEKRRKERDHKYGNRRRRRRPDPHDMYDYH 425
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu5g02255 425 SUPERFAMILY Concanavalin A-like lectins/glucanases 24 223 IPR013320 -
Vimu5g02255 425 FunFam Calreticulin 1b 25 209 - -
Vimu5g02255 425 Gene3D - 25 380 - -
Vimu5g02255 425 PANTHER CALRETICULIN AND CALNEXIN 11 379 IPR001580 GO:0005509|GO:0005783|GO:0006457|GO:0051082
Vimu5g02255 425 PRINTS Calreticulin signature 286 305 IPR001580 GO:0005509|GO:0005783|GO:0006457|GO:0051082
Vimu5g02255 425 PRINTS Calreticulin signature 319 339 IPR001580 GO:0005509|GO:0005783|GO:0006457|GO:0051082
Vimu5g02255 425 PRINTS Calreticulin signature 248 270 IPR001580 GO:0005509|GO:0005783|GO:0006457|GO:0051082
Vimu5g02255 425 PRINTS Calreticulin signature 105 123 IPR001580 GO:0005509|GO:0005783|GO:0006457|GO:0051082
Vimu5g02255 425 PRINTS Calreticulin signature 131 147 IPR001580 GO:0005509|GO:0005783|GO:0006457|GO:0051082
Vimu5g02255 425 PRINTS Calreticulin signature 220 233 IPR001580 GO:0005509|GO:0005783|GO:0006457|GO:0051082
Vimu5g02255 425 FunFam Calreticulin 210 311 - -
Vimu5g02255 425 MobiDBLite consensus disorder prediction 358 378 - -
Vimu5g02255 425 MobiDBLite consensus disorder prediction 358 425 - -
Vimu5g02255 425 PIRSF Calreticulin 5 417 IPR009169 GO:0005509|GO:0005783|GO:0006457|GO:0051082
Vimu5g02255 425 MobiDBLite consensus disorder prediction 224 272 - -
Vimu5g02255 425 Coils Coil 357 377 - -
Vimu5g02255 425 Pfam Calreticulin family 29 263 IPR001580 GO:0005509|GO:0005783|GO:0006457|GO:0051082
Vimu5g02255 425 Pfam Calreticulin family 265 338 IPR001580 GO:0005509|GO:0005783|GO:0006457|GO:0051082
Vimu5g02255 425 MobiDBLite consensus disorder prediction 224 238 - -
Vimu5g02255 425 ProSitePatterns Calreticulin family signature 1. 103 118 IPR018124 GO:0005509
Vimu5g02255 425 ProSitePatterns Calreticulin family signature 2. 135 143 IPR018124 GO:0005509
Vimu5g02255 425 MobiDBLite consensus disorder prediction 253 268 - -
Vimu5g02255 425 Coils Coil 384 404 - -
Vimu5g02255 425 Gene3D Calreticulin/calnexin, P domain 210 311 IPR009033 GO:0005509|GO:0005515
Vimu5g02255 425 SUPERFAMILY P-domain of calnexin/calreticulin 206 321 IPR009033 GO:0005509|GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu5g02255 Vimu-Chr5 33712752 33717264 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu5g02255 8 346 Miscellaneous Gene Families AT5G61790 34.925 5.74e-64 213
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu5g02255 K08057 - gmx:100802428 764.992