Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu5g02251 ATGGGGTTGGAATCGGTCGGAGATTTAGCCATTAACGCAATACTGAGGAAGTTAGAAGCAGAAGACATTGCCAGAGTTGCCTGTGCCAGCAAAAGGTTTAGGTCTTTTGCATCCGATGACACTCTTTGGATCAATCTCTGCTTCAATGAACTCGCTTTGACCCAACCCATCGATCATCTTGGAAACCCTTTCCCTTCTTTCAAGGAATGCTATCAAGCATGGAGAAAAGCTTTTGGAATGTATCCTTGGTCTCTTGTTAAGCGTGTGAAAAGGTGCTGGAATAGGATAAAAACCTGGTTGACCAATCATTTTCCTGAAGCTGAGGCCACACTTTGTAAAGGGGCAACTGAAGCTGATATTCAGATGTTGGAGAATTTGTTAAAGGTGGACTTGCCACTTCCTACGAGGATCCTTTATCGCTTCCATAATGGGCAAGAAATCGTAAAAGCAAATCTAGAAACTAGTACCTTTGGAAGTTCTTTGGGTCTAATTGGGGGTTACTCCTTCTATAATCATCTGGTGAATGTTTACCTATTGCCCATACATCAGATAATCCAAGAAACTCAGCAAATTAGGCATCACTTGAGCTTTTTAAGAAGACCCAAGTTTGTTCTTGTGGCTGCTTCCTCCACACTCAGTAGAAAATTGTTTTTCCTCAATTGTTCAAATGGTCAACTATATGTTGGAACCAATAAACTTCGTTCTGAAAAAGACATTATCCCTTGTGTACCTCAAGATCTGATAAGTTTACATCAGGAATCGAATGGTGAAGAGCAACAAGATGCCATGCTACTGTGGTTAGAAGAACATGGTCGCCGTTTAGAAAATGGCTTCATCAAACTTTGTGAAAATAAATATGGCCGAAGCATTAATCTTTTCCCAGAAGAACCCCCTTTTTGTTCAACAGCTGTTACTAATGGTGTGAAGGTTCGCTCGTCTGCATTGATTATCCCTGAGTTTATTGATCCTCAAGATGACAGTGAAAAGTACTTATTTGCTTATTCGATCCGCTTGTCCCTTGAACCGCAAGGATGTTTGATTAATGGAATGTCCTTCAACTCTTGTCAACTCCATTGGAGGCGCTGGATCATCCGTGCTAATGATAATGTTGTATCGGATGTCAATGGAGAAGCTGTTATAGGACAGTATCCACTTTTGCATCCTGGTGGACAAGAATTTGTTTATCAGAGTTGCACTCCCCTACTAACGCCATCAGGTTCCATTGAAGGCTCTTTTACATTTATACCTGGCAGCTTGGCATACCCAAAAGGAGACCCTTTTCTAGCTACAGTGGCACAATTCCCTCTCCAGCTGCCAGACTACATTTTCTGA 1332 0.4167 MGLESVGDLAINAILRKLEAEDIARVACASKRFRSFASDDTLWINLCFNELALTQPIDHLGNPFPSFKECYQAWRKAFGMYPWSLVKRVKRCWNRIKTWLTNHFPEAEATLCKGATEADIQMLENLLKVDLPLPTRILYRFHNGQEIVKANLETSTFGSSLGLIGGYSFYNHLVNVYLLPIHQIIQETQQIRHHLSFLRRPKFVLVAASSTLSRKLFFLNCSNGQLYVGTNKLRSEKDIIPCVPQDLISLHQESNGEEQQDAMLLWLEEHGRRLENGFIKLCENKYGRSINLFPEEPPFCSTAVTNGVKVRSSALIIPEFIDPQDDSEKYLFAYSIRLSLEPQGCLINGMSFNSCQLHWRRWIIRANDNVVSDVNGEAVIGQYPLLHPGGQEFVYQSCTPLLTPSGSIEGSFTFIPGSLAYPKGDPFLATVAQFPLQLPDYIF 443
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu5g02251 443 Pfam ApaG domain 324 415 IPR007474 -
Vimu5g02251 443 Pfam F-box-like 14 48 IPR001810 GO:0005515
Vimu5g02251 443 PANTHER F-BOX PROTEIN SKIP16 1 443 - -
Vimu5g02251 443 SUPERFAMILY SMI1/KNR4-like 93 147 IPR037883 -
Vimu5g02251 443 Gene3D ApaG domain 299 443 IPR036767 -
Vimu5g02251 443 SUPERFAMILY ApaG-like 304 443 IPR036767 -
Vimu5g02251 443 SUPERFAMILY F-box domain 13 74 IPR036047 GO:0005515
Vimu5g02251 443 Gene3D - 8 98 - -
Vimu5g02251 443 ProSiteProfiles ApaG domain profile. 302 443 IPR007474 -
Vimu5g02251 443 ProSiteProfiles F-box domain profile. 1 46 IPR001810 GO:0005515
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu5g02251 K10290 - gmx:100809876 749.584