Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu5g02248 ATGGGGAAGCCTTTGTTTTACGAGATCTTGGAAAAACCTGCCACAAGTTGTATCATAGGATTATGCAGCATGATTTGGTTCTATATACAGAAGAAAAATATTGGGTATTCACACGTGGGTCTGAGTTATGAGACGGCAGTGGAAGGGCATTATTGGAGGATAATTACTTCTGCTTTTTCTCATATTAGTGTTATTCATCTTGTTTTTAATATGAGTGCATTATGGAGTCTTGGAGTGGTAGAACAGCTTGGGCACTTAGGCCTTGGTGTTGAGTACTACTTGCAGTACACACTTGTGTTGGTTATTGTATCAGGAGTTCTGGTTTTGGCAATGTATCATTTGTTGATTCAGAAATTCAAGCTTGAGTATTTTCGTCGAGTGACAGCTGTTGGGTATTCCTGTGTTGTTTTTGGGTGGATGACAATTCTGTCTGTAAAGCAACCATCTTCCAAGTTGGATCTCTTTGGGTTTCTTTCTCTCCCTATCAGTTTTGCGCCGTTTGAATCGCTTATTTTCACTTCGATCATCGTTCCTCAGGCAAGTTTTCTTGGCCATTTGTCAGGGATTGTTGTTGGATATGCTATAGCATGGGGTTTGATTCATGGGATGAGCAATTACTGGGCACTCTCCTTGTTGGGATGGATTCTGCTTGTCTTTGTTTTTAGTTTGAAGAGATCTGGTGCTCTTGACCTAAGCTTTCTTGAGATTGAGTCTGTTACCGATCCTTCCTTACCTTCTGTGCGGTTTTTGGCATCAAGCACTGGCAGAACACTTCAGATGAGTGCTTTGCCAAATGGAAATGTTGATATTGTCTAA 816 0.4093 MGKPLFYEILEKPATSCIIGLCSMIWFYIQKKNIGYSHVGLSYETAVEGHYWRIITSAFSHISVIHLVFNMSALWSLGVVEQLGHLGLGVEYYLQYTLVLVIVSGVLVLAMYHLLIQKFKLEYFRRVTAVGYSCVVFGWMTILSVKQPSSKLDLFGFLSLPISFAPFESLIFTSIIVPQASFLGHLSGIVVGYAIAWGLIHGMSNYWALSLLGWILLVFVFSLKRSGALDLSFLEIESVTDPSLPSVRFLASSTGRTLQMSALPNGNVDIV 271
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu5g02248 271 FunFam RHOMBOID-like protein 13 9 201 - -
Vimu5g02248 271 Pfam Rhomboid family 48 201 IPR022764 GO:0004252|GO:0016020
Vimu5g02248 271 SUPERFAMILY Rhomboid-like 13 199 IPR035952 -
Vimu5g02248 271 Gene3D - 10 200 IPR035952 -
Vimu5g02248 271 PANTHER RHOMBOID PROTEASE 13 210 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu5g02248 Vimu-Chr5 33663510 33669955 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu5g02248 - - gmx:100818954 518.464