Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu5g02245 ATGGCAACATCGTTATGCCGCACCATAAGGAGAGCATCCTCTGCTCTCAGATTTTCGTACGCCACCTCGTTTTCGGTCTCTCTCAGGTTCTCTCTCGTCCTTCTCTCTGTCACATTTTATTCAGTTATCTGCCAAGTCACTACCCGAAACCAATTACACTGTTATATGGACAATATATTAGAAGCACCTAACACGGTTGGTTTCGATTTTCTTGTTTGTGGTTCTGGGTCAGTCGGGAGAAGCAATATGTGTGTGTTTTCTCCTTTGAGGCATCGTGTCTCGCTAGGAGAGCAAGGTTATTGGTGGGGTTTAAGAAATTTGAGCCATGGCAGGGTGAACCTTGTGATAACAGGAGGGAAGACCAAGTTTGAGACTCATGAGGTTGAGCCTCCTAAGAAGGACAAGTGGAAGACCAAGAAGAGATTGAAGATGCAGAGGAAGAGAGAGAAGGAGAAGAGGAAAGCGGCCAACAGGAAAGACCCTCGTCGACTTGGTGTCAAAGGGAAGAAGAAGAAGCAGAGATTTGCCAGTGCAGATGAGAGAATTAAGTACAAGATTGAGAAGGTATGCTACGATTGGATTTCCTCCTCTTCCTATTGTGCAGCATACTGCTTCATTTGTATGGTTTTAATGGTGTTTGTTTGCTTTGTGCGGGCCAAAATTAAGGAAGCATTGCTCATTGAAAGGCTCAAAAGATATGAAGTTCCTAAACTTCAGGGTCCTGTTGTGAAGCCTGATAGCTTGACGGGGGAGGAAAGGTTTTATTTGAAGAAAATGGCTCAGAAGAGATCTAATTATCTACAAATTGGCAGAAGAGGATTATTTGGAGGGGTTGTTCTCAATATGCATATGCATTGGAAGAAACATGAGACTGTTAAGGTCATATGCAAGCCTTGTAAGCCTGGTCAGGTACACGAGTATGCACAAGAACTTGCCAGATTGAGCGGCGGTATTCCACTTCAAATAATTGGAGATGACACTATAATATTTTATCGTGGAAAGAACTACGAACAGCCTGATGTTATGTCACCAATTGATACACTGTCCAAGAAAAAGGCACTTGAAAAATCCAAGTATGAGCAATCACTTGAGTCAGTGAGGCGCTTCATTGCTATTGCTGAGAAAGAACTAGAGCTATATTACAGACACGTTGCACTTTATGGTGATCCAAACAACCGAAATCCCTTATCAATGCTGGACAGTCCAAGTGAAAACTCCAAGCAAAAGGGGAATCATAGAATTCAAGATAAAAAAATTCCTGACTTGAACAGTGACTATTTTTCAACCAGTCTTTCAGAGACTGAAGCAGATTCCACGGAAATGGAGCTGTCAGAAACAGAAGATAGTTTTCAAGATGAAAGCTTGTCAATGAATGAATCAGATTCTGAAGAGGACAGCATGTCGGATTCCAATAGTAATCAAGAAAAGGAGGTATATTTTACTAAATTGCAATATGAAAGTGTAAGGTCAACCACAGGTTCTTCATCAATGGCTAAACGTAGCCACTATTACAATAATAGTAATAATAATCAGTGTTTATAA 1542 0.4118 MATSLCRTIRRASSALRFSYATSFSVSLRFSLVLLSVTFYSVICQVTTRNQLHCYMDNILEAPNTVGFDFLVCGSGSVGRSNMCVFSPLRHRVSLGEQGYWWGLRNLSHGRVNLVITGGKTKFETHEVEPPKKDKWKTKKRLKMQRKREKEKRKAANRKDPRRLGVKGKKKKQRFASADERIKYKIEKVCYDWISSSSYCAAYCFICMVLMVFVCFVRAKIKEALLIERLKRYEVPKLQGPVVKPDSLTGEERFYLKKMAQKRSNYLQIGRRGLFGGVVLNMHMHWKKHETVKVICKPCKPGQVHEYAQELARLSGGIPLQIIGDDTIIFYRGKNYEQPDVMSPIDTLSKKKALEKSKYEQSLESVRRFIAIAEKELELYYRHVALYGDPNNRNPLSMLDSPSENSKQKGNHRIQDKKIPDLNSDYFSTSLSETEADSTEMELSETEDSFQDESLSMNESDSEEDSMSDSNSNQEKEVYFTKLQYESVRSTTGSSSMAKRSHYYNNSNNNQCL 513
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu5g02245 513 MobiDBLite consensus disorder prediction 391 513 - -
Vimu5g02245 513 Pfam CRS1 / YhbY (CRM) domain 248 332 IPR001890 GO:0003723
Vimu5g02245 513 PANTHER GROUP II INTRON SPLICING FACTOR CRS1-LIKE 106 188 IPR040286 -
Vimu5g02245 513 MobiDBLite consensus disorder prediction 422 437 - -
Vimu5g02245 513 SMART CRS1_YhbY_2 248 332 IPR001890 GO:0003723
Vimu5g02245 513 MobiDBLite consensus disorder prediction 472 513 - -
Vimu5g02245 513 MobiDBLite consensus disorder prediction 438 468 - -
Vimu5g02245 513 ProSiteProfiles CRM domain profile. 246 343 IPR001890 GO:0003723
Vimu5g02245 513 Coils Coil 139 159 - -
Vimu5g02245 513 Gene3D - 247 345 IPR035920 -
Vimu5g02245 513 MobiDBLite consensus disorder prediction 127 172 - -
Vimu5g02245 513 MobiDBLite consensus disorder prediction 136 153 - -
Vimu5g02245 513 MobiDBLite consensus disorder prediction 406 420 - -
Vimu5g02245 513 SUPERFAMILY YhbY-like 247 342 IPR035920 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu5g02245 Vimu-Chr5 33648940 33651652 Dispersed/Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu5g02245 - - vun:114168415 658.292