Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu5g02230 ATGGTTTCAGATTCCGATCCTTCGTGTAAGACATGGGTTTCAGATAAATTAATGTCCCTACTGGGATATTCTCATCCCACAGACGTACAGTACATGATTGGACTAACCAAACAAGCTACTTCACCAGCTGATTTGGTGGGCAAGCTAGTGGAGTTTGAGATCTCATCAATGGACACTAATGCATTTGCGGAAGAAATTTACTCAAGAGTTCCTCGCAAGTCATCTGGTCTAAATCAATATAAAAAACATGAGAGAGAAGCTGTAATGTTGGCCAGGAAGCAGAAGACTTACACAATTTTGAAGGCTGACGACGATAGTGATGATGAATCTGGGGATAAATCTTCAATAACTACTACTTCATCTGGAAGGCTTGACAATCACAAAAAAAAAAAGCGTTTCAGGAAGAAAACCGGAGTTCAAGATGACCACGACGATGAGGTGATTTTGAGAAAGGAAAGTGAGAGACAAGTGAAGAGAAGAACTTCCTCCGGTGATGATAATGATTCGGAGTCTGAAGAAGAAAGGTTGAAAGATCAAAGAGAGAAGGAGGAACTAGAGCAGCATATGAGACATCGAGATGCAGCTGGGACGCGGAAGTTGACTGAACATAAATTATCACGAAAGGAGGAAGAAGAGGCAATTCGAAGATCTAGTGCTGCTGAGCCGGAGGATATTCAAGCTTTGAGAAAGGTTTCAAGGCAAGAATACTTGAAGAAAAGGGAGTTAAAGAAATTAGAAGAACTAAGAGATGATATAGAAGATGAGCAATATCTGTTTGAAGACGTGAAGCTTTCGGAAGCAGAATATCGTGAATTCAGGTACAAGAAAGAGATCTATGAACGTGTGAAGAAGCGCACAGAGGAGGCTGACAATGTGAATGAGTATAGAATGCCAGATGCTTATGATGAGGAAGGTGGTGTTAATCAGGAGAAGAGGTTTTCTGTGGCTATGCAGCGTTACAGGGATCCAAATGCCGCAGATAAAATGAATTCATTTGCTGAACAAGAGGCTTGGGAGGAACATCAAATTGGAAAGGCAACGCTGAAGTATGGTTCAAAGAATAAAAAACATGTCTTTGATGATTATCAGTATGTGTTTGAGGACCAGATTGAGTTTATAAAGGCATCAGTAATGGATGGAGATAAGTATAATTACGAAGAGCCGGAAGATTCTCTCGAAAAGTCCAGAGCAATGTCAGCTTTCGAGGCACTTCAGGAGGAGAGGAAAAAGTTACCCATATACCACTATCGGGATGAATTGCTCCAAGCTGTTCATGATCACCAGATACTTATAATTGTTGGAGAAACTGGTTCTGGAAAGACAACACAGATCCCCCAATATCTTCATGAAGCTGGATACACAAAGCATGGAATGATTGCATCTATGAGTGTTGCTGCCCGAGTTTCTCAAGAAATGGGTGTTAAACTAGGACATGAGGTTGGTTACTCCATCCGTTTTGAAGATTGTACATCAGAGAAAACCATTCTGAAATATATGACTGATGGAATGTTACTGAGGGAATTTCTTGGTGAGCCTGATCTAGCAAGTTATAGTGTTGTGATGTTCCCACTTGATCCAATGTTGTCAAAAATGATAGTGGCTTCAGAAAATTTCAAGTGTTCAGATGATATCATTTCAATTGCTGCTATGCTTTCTGTTGGAAACTCAATATTTTACCGTCCAAAGGATAAACAAGTCCATGCAGACAATGCAAGGATGAATTTTCACACGGGAGATGTTGGAGACCATATTGCATTGCTAAAGGTCTACAATTCATGGAAGGAGACCAATTATTCAACGCAATGGTGTTATGAAAATTATATACAGGTACGGAGTATGAAACGGGCAAGGGATATCCGTGATCAACTGGCAGGTCTTTTAGAGAGGGTTGAAATTGAACTGATATCAAACGAAAGTGATTTAGATGCCATCAAGAAATCTATTACTTCTGGGTTTTTCCCACACTCTGCTAAACTTCAAAAGAATGGATCTTATCAAACTATCAAACATCCCCAGACTGTTCACATACATCCTAGTGCAGGGCTGGCAGAGGTTCTTCCTAGATGGGTTATATACCATGAACTAGTACTCACAACCAAGGAATATATGAGACAGGTGACCGAATTAAAGCCGGAGTGGTTGATGGAGATTGCGCCTCACTATTACGAGCTTAAGGATGTTGAAGACTCGTATTTCAAAAAAATGCCCCGAGGAGCAGGTCAATTTTTTGTTGTTGCCTCTACTACTACACTCACCGCTGTCACCGACGACCCTATTTACCGCTGCCGTGATCACCATGCCATCAACGATGCCTTCATCGGATCTCCTATCGATTTGCGTCCTTTTTCGTCGTGCATGGTGACATGTCTAATAGTAATTCAGAGCGTCGATGTCGCTCGTTTTCCGCTTTCAGGTTCATCGTGTGTGTTGTTGCACGGTCCTGTCTCCTCTCAAGTATTTATTCAGAGCACCGATGTTGCTCTTGTTCCCTTTTTAGATTCCTCTTCGTATTTCCACCCCCACCCCACCAAAGCTTTGAAACCTCCTCCTCCAAACGCTCTGCAACTCTTACTTTCCAATTCCTCTCTGTTTGTGCGGCTGTTGTGCGGTGCGGTTGTGGTTGCTGCGCAGAGGGTGCTGTCAGGCCCAACAGTGAAATGTGCTTTGGTAACCGACCCGAATAGCGATTCGGATCAGAAGATGATGGAGGAGCTGAGCAGAGGAGTTTGGGAAGTGTTTGGTGGCTTCTCAGATTCTGTTCCTTTAGAGATGACGGTAGCGGCAGGAATCGGTTACGCTCTGGTAGCGTTAGGGCCCTCTCTCTCCCTCTTCATTTCCGTCATTTCCAAAAAGCCCTTCCTCATTCTCACTGTTCTCTCCAGGGGGTTTTTGCCCCTCAATACAACCGCTTGGTGGCCTTTTGGAATTCTTATATTCTCATCTGTTGCTTTTCAAGAAGCTCTGAGGCTGTTCTTCTGGAAAATATACAAGAGGTTAGAAGACATGTTAGATGCCTTTGCTGACAGAGTATCAAAACCACATCTTCTCCTGACAGATAAGATGCTGATTGCTCTGGCTGGTGGGTTGGGCCATGGTGTTGCCCATGCTGTGTTCTTCTGCATCAGCCTATTAACTCCTGCATTTGGTCCAGCAACATATTTTGTTGACAGGTGTTCAAAAGTTCCATTTTTCCTTCTTTATGGTGAGTTTCCCACAGCTAGTTGTCCAACTATTGCTCTTGCATTTGTCACAATCCACACATTCTCAATGGTCATCGCATTTAATGGATACACAGTGGGGAACAAAGTGGACACATATCTTGTTCCCATTGTTCACATTGTTGCAGGAATGCTGACACTGGTGAATTTGGCTCCTGGTGGTTGCGTTGTTGGCATTCCTCTTCTTTATTTCACTGCTATCTTGATCTTGGTTCATTGTGGGAGGATGGTTTGGAGAAGATTGACAGAAAACCCAATCAGACCAGGTCACTCATAG 3495 0.4283 MVSDSDPSCKTWVSDKLMSLLGYSHPTDVQYMIGLTKQATSPADLVGKLVEFEISSMDTNAFAEEIYSRVPRKSSGLNQYKKHEREAVMLARKQKTYTILKADDDSDDESGDKSSITTTSSGRLDNHKKKKRFRKKTGVQDDHDDEVILRKESERQVKRRTSSGDDNDSESEEERLKDQREKEELEQHMRHRDAAGTRKLTEHKLSRKEEEEAIRRSSAAEPEDIQALRKVSRQEYLKKRELKKLEELRDDIEDEQYLFEDVKLSEAEYREFRYKKEIYERVKKRTEEADNVNEYRMPDAYDEEGGVNQEKRFSVAMQRYRDPNAADKMNSFAEQEAWEEHQIGKATLKYGSKNKKHVFDDYQYVFEDQIEFIKASVMDGDKYNYEEPEDSLEKSRAMSAFEALQEERKKLPIYHYRDELLQAVHDHQILIIVGETGSGKTTQIPQYLHEAGYTKHGMIASMSVAARVSQEMGVKLGHEVGYSIRFEDCTSEKTILKYMTDGMLLREFLGEPDLASYSVVMFPLDPMLSKMIVASENFKCSDDIISIAAMLSVGNSIFYRPKDKQVHADNARMNFHTGDVGDHIALLKVYNSWKETNYSTQWCYENYIQVRSMKRARDIRDQLAGLLERVEIELISNESDLDAIKKSITSGFFPHSAKLQKNGSYQTIKHPQTVHIHPSAGLAEVLPRWVIYHELVLTTKEYMRQVTELKPEWLMEIAPHYYELKDVEDSYFKKMPRGAGQFFVVASTTTLTAVTDDPIYRCRDHHAINDAFIGSPIDLRPFSSCMVTCLIVIQSVDVARFPLSGSSCVLLHGPVSSQVFIQSTDVALVPFLDSSSYFHPHPTKALKPPPPNALQLLLSNSSLFVRLLCGAVVVAAQRVLSGPTVKCALVTDPNSDSDQKMMEELSRGVWEVFGGFSDSVPLEMTVAAGIGYALVALGPSLSLFISVISKKPFLILTVLSRGFLPLNTTAWWPFGILIFSSVAFQEALRLFFWKIYKRLEDMLDAFADRVSKPHLLLTDKMLIALAGGLGHGVAHAVFFCISLLTPAFGPATYFVDRCSKVPFFLLYGEFPTASCPTIALAFVTIHTFSMVIAFNGYTVGNKVDTYLVPIVHIVAGMLTLVNLAPGGCVVGIPLLYFTAILILVHCGRMVWRRLTENPIRPGHS 1164
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu5g02230 1164 PANTHER ATP-DEPENDENT RNA HELICASE 395 521 - -
Vimu5g02230 1164 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 521 626 IPR027417 -
Vimu5g02230 1164 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 406 522 IPR027417 -
Vimu5g02230 1164 Coils Coil 166 186 - -
Vimu5g02230 1164 MobiDBLite consensus disorder prediction 173 228 - -
Vimu5g02230 1164 Coils Coil 238 258 - -
Vimu5g02230 1164 MobiDBLite consensus disorder prediction 103 228 - -
Vimu5g02230 1164 Gene3D - 520 637 - -
Vimu5g02230 1164 Pfam Helicase associated domain (HA2) 520 570 IPR007502 GO:0004386
Vimu5g02230 1164 Coils Coil 613 633 - -
Vimu5g02230 1164 Gene3D - 366 519 IPR027417 -
Vimu5g02230 1164 Pfam Oligonucleotide/oligosaccharide-binding (OB)-fold 644 721 IPR011709 -
Vimu5g02230 1164 MobiDBLite consensus disorder prediction 137 166 - -
Vimu5g02230 1164 SMART ha2_5 501 587 IPR007502 GO:0004386
Vimu5g02230 1164 Pfam Aph-1 protein 925 1152 IPR009294 GO:0016020|GO:0016485|GO:0043085
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu5g02230 Vimu-Chr5 33541784 33549321 Dispersed/Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu5g02230 K12813 - gmx:100809559 833.172