Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu5g02219 ATGGCATACAAAGAATATGTACTGCTACCTCTCATTGCTCTACTTTCTTCATTCATTGCTGTCACAGAAAGTATAGCCCTTACTCCACAAATAGATCTGTTGAATCGAAACAGTTTCCCAACAGGCTTCATCTTTGGTACAGCATCCTCAGCGTACCAGTATGAAGGTGCAGCCAATGAGGGTGGTAGAGGACCAAGCATTTGGGATACCTTCACTGACAAATATCCTGAAAAGATAGAGGACAGAAGCAATGGAGATGTTGCAGTTGATTCCTATCATCGCTACAAGGAAGATGTTCAGATTATGAAGAATATGAATTTGGATGCTTACAGAATTTCTATATCTTGGTCAAGAATTCTTCCGAATGGAACACTGAGTGGAGGTATAAACCAAAAAGGAATTGACTATTACAACAACCTTATCAATGAGCTACTGGCTAATGGTTTGGAACCATTTGTGACTCTTTTTCATTGGGATCTTCCACAATCCTTAGAAGATGAATATGGTGGCTTCTTAAGTCCTCACAGTGTGAAAGATTTCCAGGATTATGCAGAACTTTGCTTCAAGGAATTCGGAGATAGAGTAAAAAAGTGGATAACTTTGAATGAGCCATATAGTTACAGCAACAAGGGTTATGCATTAGGAAGACATGCTCCAGGTCGATGTTCAGATTGGTGGAGTCCTAATTGCAATGGTGGTGATTCAGGAACAGAACCCTATTTGGCTACACATCACCAACTTCTTGCTCATGCAGCTGCTGTTAATGTCTACAGGACCAAGTTTATGGATCCACTTACAAGAGGAGATTATCCAGAAATCATGCGTTCCTTGGTCAAATCCCGATTACCAAAGTTTACAAAGGAGCAATCCAAATTGCTTATTAATTCATTTGATTTTCTTGGCATAAATTACTACACTGCCAATTTTGTCTCTGATGCACCAGAATTAAGAAATGCCAGAGCCAGTTATATGACAGATCCCCTCGTAAATTGTTCATTTGTGTGTGACGGAAAACTCATTGGTGAAAATGTTGTGTCGGATTGGTTGTACGTTTATCCAAAAGGATTTCGTGAAGTTTTACTATACACCAAAGAGAAATACAATAATCCTTTAATTTATATTACTGAGAATGGTGTAAGTGAATATGATGATCATTCATTATCACTTGAAGAATCTCTTTTGGATATTTATAGAGTTGACTACCATTACGGTCATTTATATTATCTTCTTGATGCAATGAAGAATGGTGTAAATGTAAAAGGGTATTTCGTGTGGTCTCTCTTAGACAATTTTGAATGGGAATCAGGCTACATCAAGCGATTTGGAATGAATTTTGTTGATTACAAGAATGGTCTGAAAAGATACTCAAAGCTTTCTGCCTTGTGGTTCAAGGATTTTCTCAACATAAAAACCAAACTTCATGATTCCATATAA 1434 0.3752 MAYKEYVLLPLIALLSSFIAVTESIALTPQIDLLNRNSFPTGFIFGTASSAYQYEGAANEGGRGPSIWDTFTDKYPEKIEDRSNGDVAVDSYHRYKEDVQIMKNMNLDAYRISISWSRILPNGTLSGGINQKGIDYYNNLINELLANGLEPFVTLFHWDLPQSLEDEYGGFLSPHSVKDFQDYAELCFKEFGDRVKKWITLNEPYSYSNKGYALGRHAPGRCSDWWSPNCNGGDSGTEPYLATHHQLLAHAAAVNVYRTKFMDPLTRGDYPEIMRSLVKSRLPKFTKEQSKLLINSFDFLGINYYTANFVSDAPELRNARASYMTDPLVNCSFVCDGKLIGENVVSDWLYVYPKGFREVLLYTKEKYNNPLIYITENGVSEYDDHSLSLEESLLDIYRVDYHYGHLYYLLDAMKNGVNVKGYFVWSLLDNFEWESGYIKRFGMNFVDYKNGLKRYSKLSALWFKDFLNIKTKLHDSI 477
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu5g02219 477 ProSitePatterns Glycosyl hydrolases family 1 active site. 372 380 IPR018120 -
Vimu5g02219 477 Gene3D Glycosidases 19 260 - -
Vimu5g02219 477 PRINTS Glycosyl hydrolase family 1 signature 395 406 IPR001360 GO:0004553|GO:0005975
Vimu5g02219 477 PRINTS Glycosyl hydrolase family 1 signature 296 310 IPR001360 GO:0004553|GO:0005975
Vimu5g02219 477 PRINTS Glycosyl hydrolase family 1 signature 416 433 IPR001360 GO:0004553|GO:0005975
Vimu5g02219 477 PRINTS Glycosyl hydrolase family 1 signature 440 452 IPR001360 GO:0004553|GO:0005975
Vimu5g02219 477 PRINTS Glycosyl hydrolase family 1 signature 372 380 IPR001360 GO:0004553|GO:0005975
Vimu5g02219 477 ProSitePatterns Glycosyl hydrolases family 1 N-terminal signature. 43 57 IPR033132 -
Vimu5g02219 477 Pfam Glycosyl hydrolase family 1 36 259 IPR001360 GO:0004553|GO:0005975
Vimu5g02219 477 Pfam Glycosyl hydrolase family 1 261 469 IPR001360 GO:0004553|GO:0005975
Vimu5g02219 477 FunFam Beta-glucosidase 12 25 262 - -
Vimu5g02219 477 Gene3D Glycosidases 261 468 - -
Vimu5g02219 477 PANTHER GLYCOSYL HYDROLASE 38 261 IPR001360 GO:0004553|GO:0005975
Vimu5g02219 477 SUPERFAMILY (Trans)glycosidases 28 467 IPR017853 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu5g02219 Vimu-Chr5 33480789 33484465 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu5g02219 1 472 Glycoside Hydrolase AT5G44640 49.027 2.06e-175 500
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu5g02219 K01188 - gmx:100792870 755.362
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu5g02219 5 33480789 33484465 Vimu5g02219 5 33480789 33484465 ECH