Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu5g02217 ATGGCATACAAAGAATACTTAGTGATACCTCTCATTGCTCTACTTTCATCATTGATTACTGTCACAGAAAGCGTAGCCCTTACTCCACAAATAGATCTGTTGAATCGAAACAGTTTCCCAACAGGCTTCATCTTTGGTACAGCATCCTCAGCGTACCAGTATGAAGGTGCAGCCAATGAGGGTGGTAGAGGACCAAGCATTTGGGATACCTTCACTCACAAATATCCTGAAAAGATAGAGGACAGAAGCAATGGAGATGTTGCAGTTGATTCGTATCATCGCTACAAGGAAGATGTTAAGATTATGAAGGATATGAATTTGGATGCTTATAGATTTTCAATATCTTGGTCCAGAATTCTTCCGAAAGGAAAGCTAAGTGGAGGTATAAACCAAGAAGGAATTGACTATTACAACAACCTTATCAATGAGCTGTTGGCAAATGGTTTGGAACCATTTGTAACTCTTTTTCATTGGGATCTTCCTCAACCTTTAGAAGATGAATATGGTGGCTTCTTAAGTCCTCGCATTGTGGAATTCGGTGATAGAGTGAAAAAGTGGATAACTTTGAATGAGCCATGGACTTTCAGCAACAAGGGTTATGCATTAGGAGCAAAGGCTCCTGGTCGATGTTCATCTTGGTTGAGTCCTAAATGCAATGGTGGTGATTCAGGAACAGAACCCTATTTGGCTACACATCACCAACTTCTTGCTCATGCAGCTGCTGTTAATGTGTACAAGTCTAAGTATCTGAGATTTCAGAATGGTGTAATAGGCATAACATTGTATTCTACTTGGTACGAACCACTCTCAGATAGCAAACTAGATCGAAAGGCTGCTGAACGAGCTATGGAATTTTTGTTTGGATGGTTTATGGATCCACTTACAAGAGGAGATTATCCAGAAATCATGCGTTCCTTGGTCAAATCACGTTTACCAAAGTTTACAAAGGAGCAATCCAGATTGCTTATTAATTCATTTGATTTTCTTGGCATAAATTACTACACTGCCAATTTTGTCTCTGATGCACCAGAATTAAGAAATGTCAGAGCCAGTTATATGACAGATCCCCTCGTAAATTATTCAGTTTTGCGGGACGGAAAACTCATCGGTGAAAATGTAATCTTCTTGAATGGTGTAAATGTGAAAGGGTATTTTGCTTGGTCTCTTTTGGATAATTTTGAATGGGAATCAGGTTACATCATGCGATTTGGAATGAACTTTGTTGATTACAAGAATGGCTTGAAAAGATACTCAAAGCTTTCTGCGCTGTGGTTCAAGGATTTTCTCAAAATTGAAACCAAACTTCACCCTTCCATCAAGTATAAGCTTTTCTCATACTCGGGACAAGAAGGAAGCTTTTCTAGTAAAGAAGATGATCTCGCCGTAGATGGTGTGACGGCGACGCAAAGTGGTTCTCGTGGACTGGTGGTGAAGATGGTGACGACGCTGGGGTTTAGCGGTCAATGGAGGATTCGCGGTGATGGGTCGCAGCTAACGGCGAGATTGATGGTGGTGGAGATAGGATTTGACGGCGGCAAGGTTGGTGGTAGCGACAGCAAAGTTGGTGATGATAGAATTAGGGTTTCTATTGTGAAGGTGGAGGGAGTATTTGGAGAGGTGGAGAGAGCAACACCCATTAAGTTGCCGAGAAGCAAAACTCAAATGGAAAAGTGTGGTGGAACTAACAAATGGATCATTGAAGATGGGAAGGCCCAGTATCATTCATTCTTAGGGTTAAACGATTGGGAGAATTTGTTAGGTTTCAACAGGGAAACATTTGACAAAGAGGAGTTTGAGATGATGAAGAAAGGAGGGAAGCAATTGAAGAGTATCAAGAGTGTCACAAATTTCATCGTCAAGAATAGGGATCGACAAAGCAACAATGAGATAGACACCTCGCCGAAGAAGGCGATCGACAGTCCAATTCTTCCATCAACGACAACTAGAACATGGCATTTCACGGATCAGAGAGGCCAAGAGATTCAAGCACATAATGAGTCTATTTTGAGTAGTTTGGATGGAAAGTATTTAGCGAGTAATTTGAAGATTACGTTATTCATGTATGACGGGTGGTGA 2076 0.4114 MAYKEYLVIPLIALLSSLITVTESVALTPQIDLLNRNSFPTGFIFGTASSAYQYEGAANEGGRGPSIWDTFTHKYPEKIEDRSNGDVAVDSYHRYKEDVKIMKDMNLDAYRFSISWSRILPKGKLSGGINQEGIDYYNNLINELLANGLEPFVTLFHWDLPQPLEDEYGGFLSPRIVEFGDRVKKWITLNEPWTFSNKGYALGAKAPGRCSSWLSPKCNGGDSGTEPYLATHHQLLAHAAAVNVYKSKYLRFQNGVIGITLYSTWYEPLSDSKLDRKAAERAMEFLFGWFMDPLTRGDYPEIMRSLVKSRLPKFTKEQSRLLINSFDFLGINYYTANFVSDAPELRNVRASYMTDPLVNYSVLRDGKLIGENVIFLNGVNVKGYFAWSLLDNFEWESGYIMRFGMNFVDYKNGLKRYSKLSALWFKDFLKIETKLHPSIKYKLFSYSGQEGSFSSKEDDLAVDGVTATQSGSRGLVVKMVTTLGFSGQWRIRGDGSQLTARLMVVEIGFDGGKVGGSDSKVGDDRIRVSIVKVEGVFGEVERATPIKLPRSKTQMEKCGGTNKWIIEDGKAQYHSFLGLNDWENLLGFNRETFDKEEFEMMKKGGKQLKSIKSVTNFIVKNRDRQSNNEIDTSPKKAIDSPILPSTTTRTWHFTDQRGQEIQAHNESILSSLDGKYLASNLKITLFMYDGW 691
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu5g02217 691 Pfam Glycosyl hydrolase family 1 376 430 IPR001360 GO:0004553|GO:0005975
Vimu5g02217 691 Pfam Glycosyl hydrolase family 1 36 344 IPR001360 GO:0004553|GO:0005975
Vimu5g02217 691 SUPERFAMILY (Trans)glycosidases 28 430 IPR017853 -
Vimu5g02217 691 Gene3D Glycosidases 373 440 - -
Vimu5g02217 691 PRINTS Glycosyl hydrolase family 1 signature 402 414 IPR001360 GO:0004553|GO:0005975
Vimu5g02217 691 PRINTS Glycosyl hydrolase family 1 signature 378 395 IPR001360 GO:0004553|GO:0005975
Vimu5g02217 691 PRINTS Glycosyl hydrolase family 1 signature 325 339 IPR001360 GO:0004553|GO:0005975
Vimu5g02217 691 PANTHER GLYCOSYL HYDROLASE 374 432 IPR001360 GO:0004553|GO:0005975
Vimu5g02217 691 FunFam Beta-glucosidase 12 25 376 - -
Vimu5g02217 691 ProSitePatterns Glycosyl hydrolases family 1 N-terminal signature. 43 57 IPR033132 -
Vimu5g02217 691 Gene3D Glycosidases 19 372 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu5g02217 Vimu-Chr5 33459635 33466890 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu5g02217 5 429 Glycoside Hydrolase AT2G25630 47.727 1.99e-149 441
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu5g02217 K01188 - gmx:100792870 590.497