Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu5g02214 ATGGTGATGAGATTCCGCGAGGTCTCAGCGAAAGAGAGATGTTGTGGTGGTGATATTGTGGCGATGAGATTCGGCGAGGAGAGATTGAAGCATTCACAGAAACAACATCAAACGTCTAAGAAAAAAAACATGGCCTTCTACAGCTCTCTCTTTCTGGGTCTCTTTGCTCTTCTTCTTGTTAGATCTTCCAAAGTTACATGCGAAGAAACAGTTTCAGTTTCACCAACTATTGACATTTCAATCAATCGGAACACTTTTCCTCAAGGGTTCATCTTTGGAGCTGGATCTTCCTCCTACCAGTTCGAAGGTGCAGCAATGGAAGGTGGTAGAGGAGCAAGTGTATGGGACACTTTCACCCATAAATATCCAGCTAAGATCCAGGATAGAAGCAACGGAGACGTGGCCATTGACTCGTACCATCATTACAAGGAAGATGTTCAAATGATGAAGGATTCGAATTTGGATTCATACAGATTTTCCATATCTTGGTCAAGGATTCTTCCCAAAGGAAAGTTGAGTGGAGGAATAAATCAAGAAGGAATAAACTATTACAACAACCTTATCAATGAGCTGGTGGCTAATGGTATAAAACCATTTGTGACTATTTTTCATTGGGATCTTCCCCAAGCACTGGAAGATGAGTATGGAGGCTTTTTAAGTCCACTGATAGTGAAGGATTTTCGAGATTATGCAGAACTTTGCTTCAAGGAATTTGGTGATAGGGTGAAATATTGGGTTACATTGAATGAGCCTTGGAGTTACAGCCAGAATGGTTATGCAAATGGACAAATGGCACCAGGTCGCTGCTCTGCATGGATGAATTCAAATTGCACTGGTGGTGATTCTTCAACTGAACCATATTTGGTCACACATCACCAACTTCTTGCTCATGCAGCAGCTGTTCGTCTATACAAGACCAAGTATCAGACTTCTCAAGAGGGTGTGATAGGCATAACCTTGGTGGCTAATTGGTTTTTGCCACTCAGAGATACCAAAGCTGATCAAAAGGCTGCCGAAAGAGCAATTGACTTCATGTATGGATGGTTTATGGATCCATTAACTTACGGAGACTATCCAAAAAGTATGAGATCACTTGTGAGAACAAGGTTGCCAAAGTTTACTGCAGAGCAAGCTAGACTTCTTATTGGTTCATTCGATTTTATTGGCCTAAACTATTACTCTACAACATATTCCTCTGATGCACCTCAACTGAGCAATGACAACCCTAGCTACTTAACCGATTCTCTTGTCACTGCTGCATTTGAACGCGATGGGAAACCTATTGGAATCAAGATTGCTTCTGATTGGTTATACGTTTATCCTAGAGGAATTCGTGATCTCGTGTTATATACCAAGGAAAAATACAACAATCCTTTGATGTACATCACAGAGAATGGTGTCAATGAGTATAATGAACCTTCCTTATCACTTGAAGAATCTCTTATGGACACTTTCAGAATAGATTATCATTATCGTCATCTCTATTATCTTCTATCCGCAATTAGGAATGGAGCAAATGTGAAGGGATATTACGTGTGGTCTTTCTTCGACAATTTTGAATGGGCTTCGGGCTATACATCACGATTCGGAATGATTTTCATAGATTACAAAAATGGTTTGAAAAGATATCCAAAACTATCAGCAACTTGGTACAAGAACTTCCTCAAGAAAGAAACCAGACTTTATAGCTCTAGTAAATAA 1701 0.4004 MVMRFREVSAKERCCGGDIVAMRFGEERLKHSQKQHQTSKKKNMAFYSSLFLGLFALLLVRSSKVTCEETVSVSPTIDISINRNTFPQGFIFGAGSSSYQFEGAAMEGGRGASVWDTFTHKYPAKIQDRSNGDVAIDSYHHYKEDVQMMKDSNLDSYRFSISWSRILPKGKLSGGINQEGINYYNNLINELVANGIKPFVTIFHWDLPQALEDEYGGFLSPLIVKDFRDYAELCFKEFGDRVKYWVTLNEPWSYSQNGYANGQMAPGRCSAWMNSNCTGGDSSTEPYLVTHHQLLAHAAAVRLYKTKYQTSQEGVIGITLVANWFLPLRDTKADQKAAERAIDFMYGWFMDPLTYGDYPKSMRSLVRTRLPKFTAEQARLLIGSFDFIGLNYYSTTYSSDAPQLSNDNPSYLTDSLVTAAFERDGKPIGIKIASDWLYVYPRGIRDLVLYTKEKYNNPLMYITENGVNEYNEPSLSLEESLMDTFRIDYHYRHLYYLLSAIRNGANVKGYYVWSFFDNFEWASGYTSRFGMIFIDYKNGLKRYPKLSATWYKNFLKKETRLYSSSK 566
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu5g02214 566 ProSitePatterns Glycosyl hydrolases family 1 N-terminal signature. 90 104 IPR033132 -
Vimu5g02214 566 FunFam Beta-glucosidase 12 72 557 - -
Vimu5g02214 566 Gene3D Glycosidases 71 557 - -
Vimu5g02214 566 PRINTS Glycosyl hydrolase family 1 signature 483 494 IPR001360 GO:0004553|GO:0005975
Vimu5g02214 566 PRINTS Glycosyl hydrolase family 1 signature 460 468 IPR001360 GO:0004553|GO:0005975
Vimu5g02214 566 PRINTS Glycosyl hydrolase family 1 signature 528 540 IPR001360 GO:0004553|GO:0005975
Vimu5g02214 566 PRINTS Glycosyl hydrolase family 1 signature 504 521 IPR001360 GO:0004553|GO:0005975
Vimu5g02214 566 PRINTS Glycosyl hydrolase family 1 signature 384 398 IPR001360 GO:0004553|GO:0005975
Vimu5g02214 566 SUPERFAMILY (Trans)glycosidases 81 556 IPR017853 -
Vimu5g02214 566 PANTHER GLYCOSYL HYDROLASE 85 559 IPR001360 GO:0004553|GO:0005975
Vimu5g02214 566 ProSitePatterns Glycosyl hydrolases family 1 active site. 460 468 IPR018120 -
Vimu5g02214 566 Pfam Glycosyl hydrolase family 1 83 558 IPR001360 GO:0004553|GO:0005975
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu5g02214 Vimu-Chr5 33431935 33436238 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu5g02214 51 560 Glycoside Hydrolase AT5G44640 53.229 0.0 584
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu5g02214 K01188 - gmx:100813623 959.518
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu5g02214 5 33431935 33436238 Vimu5g02214 5 33431935 33436238 ECH