Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu5g02206 ATGCAGATGCAACAAATTCATGCATCAAATTCAAGCCCAAGCTATCTCATCCCTCACACGCCAAGCGTCCGTGGCATACCTCATCCTTCTTTTCAGCTATGGTCAAGGCCATCATCGTTTCCAACCCAATGGAAGCTAAAAAGGGTCAGCCATGGTTGCAGAAACGATGCCACCAAAATCAAAGCTGTGGCTGTCAACAAAACTCAAAAGGCTGTCAAAGTTAAAGCCATCATAAGTGTTCAGCCAACGATTGGTGGGATTTTCTCATCATTGGCCATAGACGCCGATGATCTAACGGATTTGCTCGGAAAAACACTTCTCGTGGAACTTGTTAGCGCTGAGCTTGATCCCAAGACGAAATTAGAGAAGAAAACCATCAAAGATTTTGCCCACAGGACGTATCGATCAACGAAAGAAGTCAGGTATTTGGCCGAGTTTGATGTGCCAGAAGACTTTGGAGAGGTTGGTGCTATTTTGGTGGAGAACGAACATCGCAGGGAAATGTTCGTGAAAGAAATCGTCCTCGATGGCTTCATATTGGGTCCCGTTAGATTTACCTGCGAGTCATGGCTTCATCCCAAGAATGAAAACCCTGTCAAAAGAGTTTTTTTCCCCGACAAGTCATATTTGCCATCAGAAACTCCAGAAGGAGTGAAGAGATTAAGAGAAGAAGAACTACAACATTTACGAGGGAATGGACAAGGTCAACGCAAGAAGTTTGACAGAATATACGATTACGATGTTTACAACGACCTCGGAGATGAAGATCGTGACCCTGAGCTCGCCAGACCGGTTCTTGGTGGCCCAGAACATCCATATCCAAGGCGTTGCAGAACAGGAAGGCCTCGCTCCTTAAAAGATCCGTTGTCGGAGGAAAGAAGTAGAACAGTGTACGTGCCCAGAGACGAAAGCTTCTCCGAAATAAAGCAATTAACGTTTAACACAAAGACGCTAGCTTCGGGATTGCAAGCGTTGGTACCAGCTCTGACGGCACTGATCACTGACAAGGAGCAACCTTTTCACGTGTTCTCGGACATAGATTCTCTTTTCGACGAAGGAGTTAGCTTGCCTCCTGGAGAAGTCAAAATCAGCACTCTCTTGCCCAGAATCGTCAATTTTATTAAGGAAAAAGGAGAGGACATTCTCCGTTTCGAGCCTCCCGCAACAATGGACAAGGATAGATTCTTTTGGTTGAGGGACGAAGAATTTGGAAGACAGACTCTAGCGGGTCTTAACCCTTGTTGCATCAAGTTGGTCACGGAATGGCCATTGAAAAGCGAACTTGACCCGGAAATTTATGGCCCTCCCGAATCAGCCATCACAACTGAACTAGTTGAGCAGGAAATAAGAGGATATTTTCCACTCCAAGAGGCCTTAAAACAGAAGAAACTGTTCATCCTGGACTACCACGACTTGCTATTGCCATTAGTGGAGCAAGTGAGAAAAATAGACGGCACGACGCTATACGGATCAAGGGCATTGTTCTTCCTGACAGGCAGCGGCACTTTGAGACCACTGGCCATTGAGCTAGTTCGCCCACCCATGGATGGAAAACCTCAGTGGAAGAAAGTCTTCAAACCCACCTGGCACTCAACCGGTGTCTGGCTTTGGAGGCTCGCCAAAATCCATGTCCTAGCTCACGACACTGGTTACCACCAACTCATCAGTCACTGGCTAAGAACTCATTGTGCAACAGAGCCATACATTATAGCAGCAAACAGGCAACTGAGTGCAATGCATCCGATCTACAGATTACTCCATCCGCATTTCCGTTACACGATGGAGATCAACGCGCTTGCTCGAGAGTCTTTGATAAACGCCGGCGGAATAATAGAGAGCTGTTTTACTCCGATGAAACACTCCATTCTGCTAAGCTCAATCGTCTATGACAAAGAGTGGCGATTTGATCTCCAGTCCCTCCCCAAGGACCTCATTCACAGGGGCTTGGCCGTCGAGGACCCCACCGCCCCTCACGGCCTCAAACTCACCATCGAAGACTACCCTTACGCCAACGACGGCCTCGACCTCTGGGCGGCCTTCAAAACCTGGTTCACCGAATACATCGACCACTACTACACCGACTCCAACGCTATTCAATCAGACACAGAACTCCAAGCCTGGTGGGAAGAGGTCAGAACCGTTGGACACGGCGACAAAAAGGATGAACCGTGGTGGCCGGTGCTGAAAACCAAAGAGGACCTCGTTGAGATTGTGACGACCATTGCGTGGACAGCTTCGGGCCACCATGCTGCTGTGAACTTCGGACAATTCTCCTTCGCCGGCTATTTCCCCAACAGGCCAACCATTGCGCGTACCAACATGCCCACCGAGGACCCTTCAGATCCGGAGTGGGAGCTGTTCTTGAAGAAACCAGAGGTGACTATGTTGAAGTGTTTTCCGTCGCAGTTTCAGGCCACCACGGTGATGACGGTGTTGGACATTCTGTCGAATCACTCGCCGGACGAGGAGTATATCGGGGAAGTACCGGAGCCGGCGTGGGAGCAGGAGCCACGTGTGAAGGCGGCGTTTGAGAAGTTCAAAGGGAGATTGATAGAGCTTGAAGGGGTTATTGATAGCAGGAATGCTGATGAGACGAAGAGGAACCGGAACGGCGCCGGGGTTGTGCCCTACGAACTTCTGAAGCCGACGTCGGAGGCCGGAGTTACCGGAAAGGGTGTTCCTTACAGCATCTCCATTTGA 2700 0.493 MQMQQIHASNSSPSYLIPHTPSVRGIPHPSFQLWSRPSSFPTQWKLKRVSHGCRNDATKIKAVAVNKTQKAVKVKAIISVQPTIGGIFSSLAIDADDLTDLLGKTLLVELVSAELDPKTKLEKKTIKDFAHRTYRSTKEVRYLAEFDVPEDFGEVGAILVENEHRREMFVKEIVLDGFILGPVRFTCESWLHPKNENPVKRVFFPDKSYLPSETPEGVKRLREEELQHLRGNGQGQRKKFDRIYDYDVYNDLGDEDRDPELARPVLGGPEHPYPRRCRTGRPRSLKDPLSEERSRTVYVPRDESFSEIKQLTFNTKTLASGLQALVPALTALITDKEQPFHVFSDIDSLFDEGVSLPPGEVKISTLLPRIVNFIKEKGEDILRFEPPATMDKDRFFWLRDEEFGRQTLAGLNPCCIKLVTEWPLKSELDPEIYGPPESAITTELVEQEIRGYFPLQEALKQKKLFILDYHDLLLPLVEQVRKIDGTTLYGSRALFFLTGSGTLRPLAIELVRPPMDGKPQWKKVFKPTWHSTGVWLWRLAKIHVLAHDTGYHQLISHWLRTHCATEPYIIAANRQLSAMHPIYRLLHPHFRYTMEINALARESLINAGGIIESCFTPMKHSILLSSIVYDKEWRFDLQSLPKDLIHRGLAVEDPTAPHGLKLTIEDYPYANDGLDLWAAFKTWFTEYIDHYYTDSNAIQSDTELQAWWEEVRTVGHGDKKDEPWWPVLKTKEDLVEIVTTIAWTASGHHAAVNFGQFSFAGYFPNRPTIARTNMPTEDPSDPEWELFLKKPEVTMLKCFPSQFQATTVMTVLDILSNHSPDEEYIGEVPEPAWEQEPRVKAAFEKFKGRLIELEGVIDSRNADETKRNRNGAGVVPYELLKPTSEAGVTGKGVPYSISI 899
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu5g02206 899 SUPERFAMILY Lipoxigenase 210 899 IPR036226 -
Vimu5g02206 899 Pfam Lipoxygenase 218 882 IPR013819 GO:0016702|GO:0046872
Vimu5g02206 899 ProSitePatterns Lipoxygenases iron-binding region signature 2. 579 589 IPR020834 GO:0016702|GO:0046872
Vimu5g02206 899 SMART LH2_4 72 206 IPR001024 GO:0005515
Vimu5g02206 899 ProSitePatterns Lipoxygenases iron-binding region signature 1. 552 566 IPR020833 GO:0016702|GO:0046872
Vimu5g02206 899 PRINTS Plant lipoxygenase signature 240 256 IPR001246 GO:0016491
Vimu5g02206 899 PRINTS Plant lipoxygenase signature 812 826 IPR001246 GO:0016491
Vimu5g02206 899 PRINTS Plant lipoxygenase signature 175 193 IPR001246 GO:0016491
Vimu5g02206 899 PRINTS Plant lipoxygenase signature 382 398 IPR001246 GO:0016491
Vimu5g02206 899 PRINTS Plant lipoxygenase signature 272 291 IPR001246 GO:0016491
Vimu5g02206 899 PRINTS Plant lipoxygenase signature 201 222 IPR001246 GO:0016491
Vimu5g02206 899 PRINTS Plant lipoxygenase signature 489 513 IPR001246 GO:0016491
Vimu5g02206 899 PRINTS Plant lipoxygenase signature 421 440 IPR001246 GO:0016491
Vimu5g02206 899 PRINTS Plant lipoxygenase signature 337 358 IPR001246 GO:0016491
Vimu5g02206 899 MobiDBLite consensus disorder prediction 274 293 - -
Vimu5g02206 899 Gene3D PLAT/LH2 domain 51 209 - -
Vimu5g02206 899 SUPERFAMILY Lipase/lipooxygenase domain (PLAT/LH2 domain) 58 209 IPR036392 GO:0005515
Vimu5g02206 899 Gene3D - 396 529 - -
Vimu5g02206 899 FunFam Lipoxygenase 531 898 - -
Vimu5g02206 899 CDD PLAT_LH2 72 206 IPR042057 -
Vimu5g02206 899 Gene3D - 309 394 IPR027433 -
Vimu5g02206 899 PANTHER LIPOXYGENASE 73 899 IPR000907 GO:0016702|GO:0034440|GO:0046872
Vimu5g02206 899 MobiDBLite consensus disorder prediction 255 293 - -
Vimu5g02206 899 PRINTS Lipoxygenase signature 552 569 IPR013819 GO:0016702|GO:0046872
Vimu5g02206 899 PRINTS Lipoxygenase signature 534 551 IPR013819 GO:0016702|GO:0046872
Vimu5g02206 899 PRINTS Lipoxygenase signature 572 592 IPR013819 GO:0016702|GO:0046872
Vimu5g02206 899 ProSiteProfiles PLAT domain profile. 87 205 IPR001024 GO:0005515
Vimu5g02206 899 ProSiteProfiles Lipoxygenase iron-binding catalytic domain profile. 208 899 IPR013819 GO:0016702|GO:0046872
Vimu5g02206 899 Gene3D - 532 898 - -
Vimu5g02206 899 Gene3D - 210 308 - -
Vimu5g02206 899 Pfam PLAT/LH2 domain 136 204 IPR001024 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu5g02206 Vimu-Chr5 33342205 33347770 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu5g02206 148 899 Acyl Lipid Metabolism Gene Families AT3G45140 61.346 0.0 966
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu5g02206 K00454 - gmx:100787202 1456.81
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu5g02206 5 33342205 33347770 Vimu5g02206 5 33342205 33347770 ECH