Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu5g02158 ATGTCGATTGTTCCAATGAACCAGGACGAGGGCAACGCTTTCAATCTATTGGCTCAGTGGGATCCGTTCCTTGATTTTCCTCTTCCTCCTTCCATCTCCAACTTCTTCCCCGGTTTCGGATTCGGATCCGGGTCGTCGGTGAACACACGTGTGGACTGGAGGGAGACACCCAGAGCGCACGTGTGGGAGGTGGCGCTTCCCGGCTTCACCAACGAAGACGTCCTGGTGGAGCTCCAAGACGAGAGGGTGCTCCAAGTGGGCGTGGAGAGTGGCAATTTCACGACCAGGTTCAAGATCCCCGACAACGCTAACCTCGAACAACTCAAAGCCAACATGCGTCACGGGGTTCTCGTTGTCACCGTTCCCAAGGTTAACCAACCCCTTCCTCCACCGCCTAGTAGGAATATCAGGGTCGTTGAAATCGACGGCACCGACTGA 438 0.5571 MSIVPMNQDEGNAFNLLAQWDPFLDFPLPPSISNFFPGFGFGSGSSVNTRVDWRETPRAHVWEVALPGFTNEDVLVELQDERVLQVGVESGNFTTRFKIPDNANLEQLKANMRHGVLVVTVPKVNQPLPPPPSRNIRVVEIDGTD 145
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu5g02158 145 SUPERFAMILY HSP20-like chaperones 26 127 IPR008978 -
Vimu5g02158 145 Gene3D - 15 139 IPR008978 -
Vimu5g02158 145 PANTHER HEAT-SHOCK PROTEIN 20 FAMILY MEMBER 47 127 IPR031107 -
Vimu5g02158 145 Pfam Hsp20/alpha crystallin family 52 138 IPR002068 -
Vimu5g02158 145 ProSiteProfiles Small heat shock protein (sHSP) domain profile. 42 142 IPR002068 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu5g02158 Vimu-Chr5 33002852 33005530 Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu5g02158 K13993 - gmx:100797426 201.445