Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu5g02147 ATGCGGCAATGGAAACAGTTGGGAGAGGTGTTGGTGGCGGCCTCTATCACCAAAACGCTATCCCACTCTCACTCTGCAACGCTCAATCTCCCACGCGCCGTCGCTCTCGGACTCACCCAGCCTCTTGTTCTGAAAATCCTTTCCAACCAATCGATTCACCCTTCGCAAAAGCTTCGTTTCTTCGAATGGACCCGCTCCCACCACAACCCTTCCCCGGCCGCGTACTCCCTCGTCCTCCGTTCCCTCTCCGGCGGCGGATTCTTCTCCGACATCCCCTCCGTCCTGCATTCCATGACGCAAGACGGCGTCGTTCTCGATCCCCACTCCCTCAACCTCCTCCTCCACTCCTTCATTCTCTCCTCGAACTTCAGTTTAGCTTTCCAATTATTAGATTACGTGCAGCACCTTCACCTCGATGCCACCACAATCTACAATACCCTCATCGCTGCTTTACTCACAAAACACCAACTCTCTCTCGCGTTATCCATCTTCTTCAAGCTCCTCGACGCCGTCGATTCGAAGTCCATCGCTTGCAACCAATTGTTGGTTTCTCTGAGAAAAGCGGATATGAGGGTGGAGTTTAAGCAAGTGTTTACAAAATTGAGGGAGAAGAAAGGGTTTTCGTTTGATACGTCGGGTTACAATGTGTGTATTCATGCATTTGGTTGTTGGGGTGATTTGGCTACTTCCTTCGCGCTCTTCAAGGAGATGAAGGACGATGGTAAGGGGTTGGTTGCCCCTGATTTGTGCACATACAACAGTCTCATCACTGCGCTTTGCAGACTTGGCAAGGTGGACGATGCGCTTGTTGTGTGGGAGGAGCTCAATGGCTCAGCTCACCAACCTGATCGCTTCACCTACACAAACCTAATTCATGGCTGTTGCAGAACTTTTAGAATGGGTGATGCCACAAGGGTTTTTAACCACATGCAGAGCCATGGGTTCCGTCCGGATACGATTGTTTATAATTCTCTGCTGGATGGACATTTTAAGGCCACCAAGGTTGTTGAAGCCTGCCAGCTGTTTGAGAAAATGGTTCAAGAAGGGGTGAGACCTTCTTGCTGGACTTATAATATTCTCATTCATGGGCTGCTTAGGAATGGCAGGCCGGAAGCTGCTTATACTATGTTTTGTGACCTCAAGAAGAAGGGCCAATTTGTGGATGGGATTACCTACAGCATTGTTGTGTTGGAGCTTTGTAAGGAGGGTCAACTGGAGGAGGCGCTGCAGTTGGTGGAAGAAATGGAAAGCAGAGGTTTTACAGTTGACCTTGTCACCATAACATCCCTGCTGATTAGCATTCATAGGCACGGTCGCTGGGATTGGACGGACCGGCTTATGAAGCATATCAGAGAAGGTAATTTGGTACTTTCCGTTCTTAAGTGGAAAACTGGAATGGAAGCTTCTATGAAGAACCCTCCTGGAAAGAAAAAGGATTACTCACCTATGTTCCCTTCCAGAGGAGATTTTAGTGACATCATGAGCTTCATGACTGGTGCCCAGGATACCACCAACATTAATGATGGGGAGGAAACTTCCTTCGATGGGATTGACGAGTGGTCATCATCACCGCACATGGATAAATTGGCCAATCAAATGTGCTCTACTGGCTATTCTTCCCAGCTTTTTGCTCCCTCTCGCGGTCAAAGAGTCCAAGAAAAAGGACAGGATTCTTTTGATGTTGACATGGTGAATACTTTCTTGTCTATATTTTTGGCAAAGGGAAAGTTGAGCTTGGCTTGCAAATTGTTTGAGATTTTCAGTGATGCAGGTGTGAGTCCAGTGAGTTATTCTTATAATTCTATCATGAGTTCTTTTGTCAAAAAGGGTTATTTCATTGAGGCTTGGGCTGTTCTGGCTGAAATGGGAGAAAAATTTTGTCCTACTGATATAGCTACATACAATATGATACTTCAAGGTTTAGGAAAGATGGGACGAGCTGATCTAGCTAGTGCTGTTCTTGATAGGCTACTGAAGCAGGGAGGTTATCTTGACATAGTTATGTATAACACTCTCATCAATGCTCTGGGGAAGGCAGGCCGAATCAATGAGGTGAATAAGCTCTTTGAGCAAATGAGGAGCAGTGGAATAAATCCGGATGTTGTCACTTACAATACATTGATTGAAGTTCACAGCAAGGCAGGGCTATTGAAGGATGCTTATAAGTTCTTAAAAATGATGCTGGACGCTGGATGCGCCCCTAACCATGTTACAGACACAACTTTAGATTATCTTGGGAGGGAAATTGATAAATTGAGATTCCAAAGGGCATCGATTTTGAGTGAAAAAAATGATCCTTCTTGA 2304 0.4618 MRQWKQLGEVLVAASITKTLSHSHSATLNLPRAVALGLTQPLVLKILSNQSIHPSQKLRFFEWTRSHHNPSPAAYSLVLRSLSGGGFFSDIPSVLHSMTQDGVVLDPHSLNLLLHSFILSSNFSLAFQLLDYVQHLHLDATTIYNTLIAALLTKHQLSLALSIFFKLLDAVDSKSIACNQLLVSLRKADMRVEFKQVFTKLREKKGFSFDTSGYNVCIHAFGCWGDLATSFALFKEMKDDGKGLVAPDLCTYNSLITALCRLGKVDDALVVWEELNGSAHQPDRFTYTNLIHGCCRTFRMGDATRVFNHMQSHGFRPDTIVYNSLLDGHFKATKVVEACQLFEKMVQEGVRPSCWTYNILIHGLLRNGRPEAAYTMFCDLKKKGQFVDGITYSIVVLELCKEGQLEEALQLVEEMESRGFTVDLVTITSLLISIHRHGRWDWTDRLMKHIREGNLVLSVLKWKTGMEASMKNPPGKKKDYSPMFPSRGDFSDIMSFMTGAQDTTNINDGEETSFDGIDEWSSSPHMDKLANQMCSTGYSSQLFAPSRGQRVQEKGQDSFDVDMVNTFLSIFLAKGKLSLACKLFEIFSDAGVSPVSYSYNSIMSSFVKKGYFIEAWAVLAEMGEKFCPTDIATYNMILQGLGKMGRADLASAVLDRLLKQGGYLDIVMYNTLINALGKAGRINEVNKLFEQMRSSGINPDVVTYNTLIEVHSKAGLLKDAYKFLKMMLDAGCAPNHVTDTTLDYLGREIDKLRFQRASILSEKNDPS 767
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu5g02147 767 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 630 664 IPR002885 -
Vimu5g02147 767 Pfam PPR repeat family 665 708 IPR002885 -
Vimu5g02147 767 Pfam PPR repeat family 317 365 IPR002885 -
Vimu5g02147 767 Pfam PPR repeat family 596 642 IPR002885 -
Vimu5g02147 767 Pfam PPR repeat family 247 296 IPR002885 -
Vimu5g02147 767 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 353 387 IPR002885 -
Vimu5g02147 767 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 700 734 IPR002885 -
Vimu5g02147 767 Gene3D Tetratricopeptide repeat domain 173 332 IPR011990 GO:0005515
Vimu5g02147 767 Gene3D Tetratricopeptide repeat domain 524 661 IPR011990 GO:0005515
Vimu5g02147 767 Gene3D Tetratricopeptide repeat domain 41 167 IPR011990 GO:0005515
Vimu5g02147 767 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 665 699 IPR002885 -
Vimu5g02147 767 Gene3D Tetratricopeptide repeat domain 662 729 IPR011990 GO:0005515
Vimu5g02147 767 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 248 282 IPR002885 -
Vimu5g02147 767 NCBIfam pentatricopeptide repeat 356 384 IPR002885 -
Vimu5g02147 767 NCBIfam pentatricopeptide repeat 633 665 IPR002885 -
Vimu5g02147 767 NCBIfam pentatricopeptide repeat 667 701 IPR002885 -
Vimu5g02147 767 NCBIfam pentatricopeptide repeat 597 628 IPR002885 -
Vimu5g02147 767 NCBIfam pentatricopeptide repeat 250 275 IPR002885 -
Vimu5g02147 767 NCBIfam pentatricopeptide repeat 285 319 IPR002885 -
Vimu5g02147 767 NCBIfam pentatricopeptide repeat 214 241 IPR002885 -
Vimu5g02147 767 NCBIfam pentatricopeptide repeat 320 354 IPR002885 -
Vimu5g02147 767 NCBIfam pentatricopeptide repeat 390 423 IPR002885 -
Vimu5g02147 767 NCBIfam pentatricopeptide repeat 702 735 IPR002885 -
Vimu5g02147 767 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 388 422 IPR002885 -
Vimu5g02147 767 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 318 352 IPR002885 -
Vimu5g02147 767 Gene3D Tetratricopeptide repeat domain 333 481 IPR011990 GO:0005515
Vimu5g02147 767 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN 1, MITOCHONDRIAL 233 431 - -
Vimu5g02147 767 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 283 317 IPR002885 -
Vimu5g02147 767 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 595 629 IPR002885 -
Vimu5g02147 767 Pfam PPR repeat 384 416 IPR002885 -
Vimu5g02147 767 Pfam PPR repeat 214 241 IPR002885 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu5g02147 Vimu-Chr5 32923658 32925961 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu5g02147 560 750 Glycosyltransferase AT1G05670 32.812 4.77e-22 99.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu5g02147 - - gmx:100788992 1350.5