Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu5g02131 ATGGGTGAGAGAAACAGTGGAAGCAAAAGCAGCAGCACTGGTCACAGGTGGATCCAAAGGAATCGGTTGGCAGAGCTTGGGGCCACTGTACACACTTGTTCTCGGAACCAAGCTGAACTCAATGAATCCTTGAAGGAATGGACCACAAAAGGATACAGAGTAACCGGTTCGGTCTGTGACGTCACCTCTCGTGTTAACAGAGAAGAGCTGATAGCTACTGTCTCCTCTCAGTTCAATGGAAAACTCAATATCCTTGTAAACAATGTGGGAACAAACTTACAGAAGCAGACCCTGGACTTAACAGCGGAAGATTTCGCATTCCTGATGAATACGAATCTTGAATCTTGTTTCCACTTAAGCCAGCTTGCACATCCTCTCCTAAAAGCTTCACAAGCTGCAAGTATCATTTTCATATCTGCCATTGCTGGTGTTGTAGCTACAAACTTAGCATCCATTATATATAGTGCAGCAAAAGGAGCGATAAACCAAGTGACAAAAAATTTGGCATGTGAATGGGCGAGAGACAACATAAGGACTAATAGTGTTGCACCGGGGCCAATTAGAACCCCTCTTTTGGAAAAGCACTCTAAAGAGGAAACAGTTATGAATGCTGTAATTTCTAAAACCCCTCTTGGACGGGTTGGAGAGGCAGAGGAGGTGTCTTCGTTGGTGGCATTTCTGTGCTTGCCTGCAGCCTCTTACATTACAGGACAGACCATCTGTGTTGATGGCGGCTTCTCTGTGAACGGCCTCCATATATTGCAGCCTTAG 771 0.454 MGERNSGSKSSSTGHRWIQRNRLAELGATVHTCSRNQAELNESLKEWTTKGYRVTGSVCDVTSRVNREELIATVSSQFNGKLNILVNNVGTNLQKQTLDLTAEDFAFLMNTNLESCFHLSQLAHPLLKASQAASIIFISAIAGVVATNLASIIYSAAKGAINQVTKNLACEWARDNIRTNSVAPGPIRTPLLEKHSKEETVMNAVISKTPLGRVGEAEEVSSLVAFLCLPAASYITGQTICVDGGFSVNGLHILQP 256
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu5g02131 256 Gene3D - 18 250 - -
Vimu5g02131 256 PRINTS Glucose/ribitol dehydrogenase family signature 154 173 IPR002347 -
Vimu5g02131 256 PRINTS Glucose/ribitol dehydrogenase family signature 80 91 IPR002347 -
Vimu5g02131 256 PRINTS Glucose/ribitol dehydrogenase family signature 127 143 IPR002347 -
Vimu5g02131 256 PRINTS Glucose/ribitol dehydrogenase family signature 175 192 IPR002347 -
Vimu5g02131 256 PRINTS Glucose/ribitol dehydrogenase family signature 210 230 IPR002347 -
Vimu5g02131 256 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 154 173 IPR002347 -
Vimu5g02131 256 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 80 91 IPR002347 -
Vimu5g02131 256 PANTHER TROPINONE REDUCTASE 21 250 IPR045000 GO:0016491
Vimu5g02131 256 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 22 248 IPR036291 -
Vimu5g02131 256 Pfam Enoyl-(Acyl carrier protein) reductase 22 247 - -
Vimu5g02131 256 FunFam Short-chain dehydrogenase reductase 14 251 - -
Vimu5g02131 256 ProSitePatterns Short-chain dehydrogenases/reductases family signature. 141 169 IPR020904 GO:0016491
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu5g02131 Vimu-Chr5 32842442 32843957 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu5g02131 23 251 Miscellaneous Gene Families AT2G29150 64.192 1.98e-103 300
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu5g02131 K08081 - gmx:100785449 367.851