Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu5g02121 ATGATTTTTCATTTTGTTGATTTGGATCCACAGTCACCTGACCTTAGCGGAATAACATGGTTCAATCTTTCTGCCATTCAGCTTGGACTGGTGGTTAGTGGTTCCCTATATGGGGCTCTTCTGGGCTCACTTCTCGCATATGCTATAGCTGATTTCCTTGGGAGGAAGCGACAACTCATTGCTGCAGCACTGTTGTATATAGTTGGTGGTGTGGTTACTGCATATTCACCAGAACTTGGTGTTCTCTTAGCAGGAAGGCTGCTTTATGGACTTGGTATAGGCTTGGCCATGCATGGGGCTCCTTTGTATATTGCAGAGACATGTCCATCACAAATCCGTGGTACCCTAGTATCATTAAAAGAACTCTTCATTGTCCTGGGGATTCTGTTGGGTTATTTTGTGGGAAGCTTTCTGATTGATACAGTTGGGGGATGGCGGTTCATGTATGGATTTAGTGCTCCAGTTGCTGTATTAATGGGGCTGGGAATGTGGACTCTCCCCGCTTCTCCTCGTTGGCTGCTTCTCAGAGCAGTGCAAGGAAAAGGTTCTTTTCAAGATTTGAAGGAAAAGGCCATTGTTTCCCTGAGCAAACTAAGGGGTCGACCGCCTGGTGACAGAGAATCTGAGAGACAAATAGAAGATACCCTTCTCTCATTGAAGTCTGCCTATGGACAACAGGAATCAGAGGGGAATTTCTTAGAGGTGTTTCAGGGTCCCAATCTGAAAGCTTTCATAATTGGTGGAGGACTAGTATTATTTCAACAGATAACAGGTCAACCAAGTGTTCTATATTATGCAGGCCCAATTCTTCAGAGCGCTGGATTTTCTGCTGCATCTGATGCTACAAAAGTTTCAGTTGTTATTGGCTTATTCAAGTTACTAATGACTTGGATTGCTGTCCTAAAAGTTGATGATTTGGGGAGAAGGCCTCTGCTGATTGGAGGTGTCAGTGGCATTGCCCTCTCTTTAGTTCTCCTTTCTGCTTATTATAAATTTCTTGGAGGGTTCCCACTTGTTGCTGTTGGAGCTTTACTTCTTTATGTTGGTTGCTACCAGATATCATTTGGGCCCATAAGTTGGTTAATGGTATCAGAGATCTTCCCACTTCGCACAAGAGGAAAGGGGATTAGTCTGGCTGTTCTTACCAACTTTGCTTCAAATGCTGTAGTCACTTTTGCATTCTCTCCATTAAAGGAGTTTCTAGGAGCAGAAAACCTTTTTCTCCTTTTTGGGGCTATTGCTATTCTATCACTTCTGTTCGTTATCTTTTCTGTCCCGGAGACAAAAGGCTTGAGTTTAGAAGATATAGAATCCAAAATCTTGAAATGA 1329 0.4319 MIFHFVDLDPQSPDLSGITWFNLSAIQLGLVVSGSLYGALLGSLLAYAIADFLGRKRQLIAAALLYIVGGVVTAYSPELGVLLAGRLLYGLGIGLAMHGAPLYIAETCPSQIRGTLVSLKELFIVLGILLGYFVGSFLIDTVGGWRFMYGFSAPVAVLMGLGMWTLPASPRWLLLRAVQGKGSFQDLKEKAIVSLSKLRGRPPGDRESERQIEDTLLSLKSAYGQQESEGNFLEVFQGPNLKAFIIGGGLVLFQQITGQPSVLYYAGPILQSAGFSAASDATKVSVVIGLFKLLMTWIAVLKVDDLGRRPLLIGGVSGIALSLVLLSAYYKFLGGFPLVAVGALLLYVGCYQISFGPISWLMVSEIFPLRTRGKGISLAVLTNFASNAVVTFAFSPLKEFLGAENLFLLFGAIAILSLLFVIFSVPETKGLSLEDIESKILK 442
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu5g02121 442 CDD MFS_GLUT10_12_Class3_like 11 436 - -
Vimu5g02121 442 NCBIfam sugar porter family MFS transporter 23 436 IPR003663 GO:0016020|GO:0022857|GO:0055085
Vimu5g02121 442 PRINTS Sugar transporter signature 364 376 IPR003663 GO:0016020|GO:0022857|GO:0055085
Vimu5g02121 442 PRINTS Sugar transporter signature 254 264 IPR003663 GO:0016020|GO:0022857|GO:0055085
Vimu5g02121 442 PRINTS Sugar transporter signature 341 362 IPR003663 GO:0016020|GO:0022857|GO:0055085
Vimu5g02121 442 PRINTS Sugar transporter signature 34 44 IPR003663 GO:0016020|GO:0022857|GO:0055085
Vimu5g02121 442 PANTHER D-XYLOSE-PROTON SYMPORTER-LIKE 2 21 440 - -
Vimu5g02121 442 SUPERFAMILY MFS general substrate transporter 19 437 IPR036259 -
Vimu5g02121 442 ProSiteProfiles Major facilitator superfamily (MFS) profile. 1 429 IPR020846 GO:0022857
Vimu5g02121 442 ProSitePatterns Sugar transport proteins signature 2. 88 113 IPR005829 GO:0016020|GO:0022857|GO:0055085
Vimu5g02121 442 Pfam Sugar (and other) transporter 24 437 IPR005828 GO:0016020|GO:0022857|GO:0055085
Vimu5g02121 442 Gene3D MFS general substrate transporter like domains 11 440 IPR036259 -
Vimu5g02121 442 FunFam D-xylose-proton symporter-like 3, chloroplastic 9 440 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu5g02121 Vimu-Chr5 32801042 32806374 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu5g02121 11 442 Organic Solute Cotransporters AT5G59250 81.713 0.0 709
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu5g02121 - - gmx:100809316 766.148