Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu5g02117 ATGCTGGGTAGTAACGAGGGTTCGTTTGGAGATGACCTGGAGAAGGAGATAGGGATGTTGCTTCGTGAGCAACGCCGACAAGAGGCTGATGATCGTGAGAGAGAGCTTAATATATTTAGGAGTGGATCAGCGCCTCCAACTGTGGAGGGTTCTTTAAGTGCTGTGGGAGGGTTGTTTGGTGGTGGTGGTGTTGCCGGTGCTGGTGGTGGTGCTGGTGCCTTTTCGGAGTTTCATGGGGCCAAGGATGTGAATGGGATTGCTTCCGAGGAAGAACTAAGGTCTGATCCAGCTTATCTTACATACTATTACTCCAATGTGAATTTGAATCCTAGGCTGCCACCTCCTTTGCTGTCAAAGGAGGATTGGAGGTTTCAACAAAGACTTAAAGGTGGTTCGTCAGCTGTGGGTGGAATCGGAGATAGGAGGAAAGTGAACAGGGCTGATGATACTGGTGGTAGATCCTTCTTTTCTACACCCCCGGGTTTTAACATGAGGAAACAAGAGAGTGAAGTGGATAATGAAAAAGCAAGAGGTACTGCAGAGTGGGGTGGTGGTGGACTCATTGGTTTGCCTGGAATAGGGCTGAGCAAACAAAAGAGTTTTGCAGAAATTTTCCAGGTGGCTTGCTTCTTCTGCCATTGTTCTATATTGTCAACTGTAGCATGTCTGGGGTTGACATACCTTACAGTCTCCATAACTGTGCAGGATGATTTGGTACGTAATACCTCTGTTACGGGCCCTCCTTCTCGTTCAGCCAGTCGTAATGCATTTGATGACAATGATATCATTAGTTCTGCTGAAGCGGAGTTGGCTCACGCACGCCTTGAGTCTACAACCACTGATGCACCAAGGCCAGGAACGAATGTTCAAGGATCATCTGCTTCCCAAAATACTGGTCTGCCAGCTTCATATTCTTATGCTGCTGCAGTGGGGTCTTCTTTATCGAGAAGCACTACTCCTGATCCACAGCACGTTGCTAGGGCTCCAAGTCCCTGCATCACACCTATTGGTGGTGGCAGAGCCATTGCTTCTGATAAGAGAGGTGTTTCCAGTCCAGATGGATTTGATGGTGTTTCATCTGGAATCAACGGGTCATCAGATCTTATGGCTGCATTGTCAGCAATGAATTTGTCAGCAGATGACATGTTAGATGGTGATAATCATTTGCCATCACAGGTTGAATCAGATGTTGATAATCACCGGAGATATCTTTTTGGTAGGCAAAGTGGTCAAGATCATGGAAAGCAACATGCTTATTTAAAGAAATCTGAATCAGCTCACTTGCAAAATTCAAGTAAGAGCAGGAGCGGATCTGATCCTAATCCTAACAATGCATCCTTGGACAGGCAGGTTGAGCTACAAAAGTCTAATGTTCCTTCCAATAACTCATATTTCAAAGGATCACCTACCTCCCATTTTAGTAGAGGAGGTAGTTTGCCTCCTCAGTACCAGCCTTTAGATGGTACAAATTCGTCATTTAGCAACTATGGTATGAGTGGCTATGCTGCAAATCCAGCATTGGCATCCTTGATGACTAATCAACTGGGAACTGGTAATCTGCCTCCATTGTTTGAAACGGTTGCTGCAGCATCAGCAATGGCAGTTCCTGGAATGGACTCAAGAATTCTTGGAAGTGGTTTGGCTTCTGGAGCTACTGCTCCATCTGATGTGCACAATCTTGGTAGGATGGGAAATCAAATTCCAGCAAGTGCTCTTCAGGCCCCTTTTGTTGATCCCATGTATCACCAGTACCTGAGAACATCTGAGTATGCAGCACAACTTGGTGCTCTTAGTGACCCCTCTGTCGACAGGACCTACTTAGGTAATTCATACATGAACTTACTTGAGCTTCAGAAAGCTTATCTTGGGTCTATTCTCTCACCTCAGAAATCTCAATACAATGTGCCACTCGGTGGTAAATCAGGAAGCTCCACTCCTCATGGTTATTATGGAAATCCTGCATATGGTGTTGGGTTGTCTTATCCAGGAAGTCCAATGGCAAACTCTGTCGTGTCGACTTCTCCAGTAGGACCTGGAAGTCCTGTTAGGCACAATGAACTGAATATGCGTTTTGCTTCTGGAATGAGGAATTTAGCTGGGGTAATGGGACCTTGGCATGTAGATACTGGGAACATTGATGAAAGTTTTGCTTCTTCTCTGTTGGAGGAGTTTAAAAGCAATAAAACAAAGTGTTTTGAGCTTTCTGAAATTTCTGGTCACGTTGTGGAATTCAGTGCCGATCAATATGGGAGCCGATTTATTCAACAAAAGCTTGAAACAGCTACTACTGAAGAAAAAAATATGGTCTATCAGGAAATCATGCCACATGCCCTTGCTTTGATGACTGATGTCTTTGGTAATTATGTGGTTCAAAAGTTTTTTGAGCATGGACTTGCAGCCCAGAGAAGAGAATTGGCCAACAAACTTCTTGGCCATGTTCTGACACTGAGCCTTCAAATGTATGGCTGCCGAGTCATCCAGAAGGCCATCGAAGTTGTTGATCTGGATCAGAAGATAGAGATGGTGCAAGAGCTTGATGGTAATGTCATGCGCTGTGTACGTGATCAGAATGGTAACCATGTCATTCAGAAGTGCATTGAATGCGTCCCTGAAGATGCAATCCATTTTATTGTCTCAACTTTTTTTGATCAAGTAGTTACTCTCTCAACCCATCCATATGGTTGTCGTGTGATACAGAGAGTACTGGAGCACTGCAAAGATCCTACAACACAGCAGAAAGTTATGGATGAAATTTTAGGGGCAGTTAGTATGTTAGCTCAGGACCAGTATGGCAACTACGTTGTTCAGCATGTTCTGGAGCATGGGAAGCCTCATGAGCGGTCTTCTATAATAAAGGAATTAGCAGGCAAGATTGTTCAGATGAGTCAACAGAAGTTTGCATCCAATGTTGTGGAGAAATGTTTGACCTTTGGAGGTCCTTCTGAGCGCCAATTACTAGTACATGAGATGCTTGGCTCCACAGATGAAAATGAGCCTCTTCAGGCCATGATGAAAGATCAGTTTGCAAATTACGTTGTACAAAAGGTGCTGGAAACATGTGATGATCAGCAGCGCGAACTGATTCTTTCACGAATTAAGGTTCATTTAAATGCATTGAAGAAGTACACCTATGGGAAGCACATCGTTGCACGTGTAGAGAAACTTGTTGCTGCTGGAGAAAGGAGAATTGCAGCTCAGTCTCCCCAACCTGCTTAG 3216 0.4456 MLGSNEGSFGDDLEKEIGMLLREQRRQEADDRERELNIFRSGSAPPTVEGSLSAVGGLFGGGGVAGAGGGAGAFSEFHGAKDVNGIASEEELRSDPAYLTYYYSNVNLNPRLPPPLLSKEDWRFQQRLKGGSSAVGGIGDRRKVNRADDTGGRSFFSTPPGFNMRKQESEVDNEKARGTAEWGGGGLIGLPGIGLSKQKSFAEIFQVACFFCHCSILSTVACLGLTYLTVSITVQDDLVRNTSVTGPPSRSASRNAFDDNDIISSAEAELAHARLESTTTDAPRPGTNVQGSSASQNTGLPASYSYAAAVGSSLSRSTTPDPQHVARAPSPCITPIGGGRAIASDKRGVSSPDGFDGVSSGINGSSDLMAALSAMNLSADDMLDGDNHLPSQVESDVDNHRRYLFGRQSGQDHGKQHAYLKKSESAHLQNSSKSRSGSDPNPNNASLDRQVELQKSNVPSNNSYFKGSPTSHFSRGGSLPPQYQPLDGTNSSFSNYGMSGYAANPALASLMTNQLGTGNLPPLFETVAAASAMAVPGMDSRILGSGLASGATAPSDVHNLGRMGNQIPASALQAPFVDPMYHQYLRTSEYAAQLGALSDPSVDRTYLGNSYMNLLELQKAYLGSILSPQKSQYNVPLGGKSGSSTPHGYYGNPAYGVGLSYPGSPMANSVVSTSPVGPGSPVRHNELNMRFASGMRNLAGVMGPWHVDTGNIDESFASSLLEEFKSNKTKCFELSEISGHVVEFSADQYGSRFIQQKLETATTEEKNMVYQEIMPHALALMTDVFGNYVVQKFFEHGLAAQRRELANKLLGHVLTLSLQMYGCRVIQKAIEVVDLDQKIEMVQELDGNVMRCVRDQNGNHVIQKCIECVPEDAIHFIVSTFFDQVVTLSTHPYGCRVIQRVLEHCKDPTTQQKVMDEILGAVSMLAQDQYGNYVVQHVLEHGKPHERSSIIKELAGKIVQMSQQKFASNVVEKCLTFGGPSERQLLVHEMLGSTDENEPLQAMMKDQFANYVVQKVLETCDDQQRELILSRIKVHLNALKKYTYGKHIVARVEKLVAAGERRIAAQSPQPA 1071
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu5g02117 1071 ProSiteProfiles Pumilio RNA-binding repeat profile. 880 916 IPR001313 GO:0003723
Vimu5g02117 1071 Pfam Pumilio-family RNA binding repeat 740 774 IPR001313 GO:0003723
Vimu5g02117 1071 Pfam Pumilio-family RNA binding repeat 884 919 IPR001313 GO:0003723
Vimu5g02117 1071 Pfam Pumilio-family RNA binding repeat 1003 1032 IPR001313 GO:0003723
Vimu5g02117 1071 Pfam Pumilio-family RNA binding repeat 923 954 IPR001313 GO:0003723
Vimu5g02117 1071 Pfam Pumilio-family RNA binding repeat 855 878 IPR001313 GO:0003723
Vimu5g02117 1071 Pfam Pumilio-family RNA binding repeat 776 809 IPR001313 GO:0003723
Vimu5g02117 1071 Pfam Pumilio-family RNA binding repeat 812 845 IPR001313 GO:0003723
Vimu5g02117 1071 Pfam Pumilio-family RNA binding repeat 958 991 IPR001313 GO:0003723
Vimu5g02117 1071 MobiDBLite consensus disorder prediction 277 298 - -
Vimu5g02117 1071 ProSiteProfiles Pumilio RNA-binding repeat profile. 772 807 IPR001313 GO:0003723
Vimu5g02117 1071 ProSiteProfiles Pumilio RNA-binding repeat profile. 808 843 IPR001313 GO:0003723
Vimu5g02117 1071 ProSiteProfiles Pumilio homology domain (PUM-HD) profile. 716 1056 IPR033133 GO:0003723
Vimu5g02117 1071 MobiDBLite consensus disorder prediction 148 169 - -
Vimu5g02117 1071 MobiDBLite consensus disorder prediction 458 484 - -
Vimu5g02117 1071 ProSiteProfiles Pumilio RNA-binding repeat profile. 917 952 IPR001313 GO:0003723
Vimu5g02117 1071 ProSiteProfiles Pumilio RNA-binding repeat profile. 844 879 IPR001313 GO:0003723
Vimu5g02117 1071 SMART pum_5 844 879 IPR001313 GO:0003723
Vimu5g02117 1071 SMART pum_5 808 843 IPR001313 GO:0003723
Vimu5g02117 1071 SMART pum_5 736 771 IPR001313 GO:0003723
Vimu5g02117 1071 SMART pum_5 995 1030 IPR001313 GO:0003723
Vimu5g02117 1071 SMART pum_5 880 916 IPR001313 GO:0003723
Vimu5g02117 1071 SMART pum_5 772 807 IPR001313 GO:0003723
Vimu5g02117 1071 SMART pum_5 917 952 IPR001313 GO:0003723
Vimu5g02117 1071 SMART pum_5 953 988 IPR001313 GO:0003723
Vimu5g02117 1071 ProSiteProfiles Pumilio RNA-binding repeat profile. 953 988 IPR001313 GO:0003723
Vimu5g02117 1071 MobiDBLite consensus disorder prediction 423 446 - -
Vimu5g02117 1071 MobiDBLite consensus disorder prediction 280 298 - -
Vimu5g02117 1071 Pfam Nucleic acid binding protein NABP 327 735 IPR012940 -
Vimu5g02117 1071 MobiDBLite consensus disorder prediction 407 422 - -
Vimu5g02117 1071 ProSiteProfiles Pumilio RNA-binding repeat profile. 736 771 IPR001313 GO:0003723
Vimu5g02117 1071 FunFam Pumilio homolog 1 isoform 2 715 1062 - -
Vimu5g02117 1071 SUPERFAMILY ARM repeat 719 1053 IPR016024 -
Vimu5g02117 1071 Gene3D - 716 1062 IPR011989 -
Vimu5g02117 1071 MobiDBLite consensus disorder prediction 407 446 - -
Vimu5g02117 1071 PANTHER RNA BINDING PROTEIN PUMILIO-RELATED 98 1055 - -
Vimu5g02117 1071 ProSiteProfiles Pumilio RNA-binding repeat profile. 989 1030 IPR001313 GO:0003723
Vimu5g02117 1071 MobiDBLite consensus disorder prediction 313 358 - -
Vimu5g02117 1071 CDD Pumilio 732 1052 IPR033712 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu5g02117 Vimu-Chr5 32783121 32789243 Proximal
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu5g02117 K17943 - gmx:100787039 1764.97