Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu5g02115 ATGCTGTCTGAATTTGAAAGAAGGCCGATGATTGGGAGTAACGAGGGTTCTTTTGGAGATGAACTGGAGAAGGAGATAGGGATGTTGCTTCGTGAGCAACGCAGACAAGAGGCTGATGATCGTGAGAGAGAGCTTAATATCTTTAGGAGTGGATCAGCGCCTCCAACTGTGGAGGGTTCTTTGAGTGCTGTTGGAGGGTTGTTTGGTGGTGGTGGCGGCGGCGGTGCTGCTGGTGCTAGTGGTGCCTTTTCTGAGTTTCAAGGGACTAGAGATGTTAATGGGATTGTTTCTGAGGAAGAGCTTAGGTCTGATCCAGCTTATCTTACGTACTATTACTCCAATGTGAATTTGAATCCTAGGCTGCCACCTCCTTTGATGTCAAAGGAGGATTGGAGGTTTCAGCAGAGACTTAAAGGTGGAGCTTCAGTTCTTGGTGGAATAGGAGATAGAAGGAAAGTGAACAGGACTGAAGAAAATGGTGGTAGGTCGATGTTTTCTACTCCACCGGGTTTTAACATGAGGAAACAAGAGAGTGAGGTGGACAATGAAAAAACAAGAGGTACTGCCGAGTGGGGTGGTGACGGACTAATTGGTTTGCCTGGACTAGGGCTGAGCAAACAGAAGAGCTTTGCAGAAATTTTCCAGGATGATTTGGGGGGTAATACCTCTGTCACGGGCCCTCCTTCTCGTCCAGCCAGTCGTAATGCATTTGATGACAATGACATCATTAGTTCTGCTGAAGCGGAGTTGGCCCATTTACGCCGTGAGTCTACGACCACAGATGCACCAAGGCCAGGAACGAATGTGCAAGGATCATCTGCTTCCCAAAATACTGGTCTGCCAGCTTCATATTCTTATGCTGCTGCAGTGGGGTCTTCCTTGTCGAGAAGCACTACTCCTGATCCACAGCATGTTGCCAGGGCTCCCAGTCCCTGCATCACACCTATTGGTGGTGGCAGAGCCATTGCTTCTGATAAGAGAGGTGTTTCCAGTCCAGATGGATTTGATGGTGTTTCTTCTGGAATCAACGGGTCATCAGATCTTATGGCAGCATTGTCAGTGATGAATTTGTCAGCAGATGACATGTTAGATGGTGATAATCATTTGCCATCGCAGGTTGAATCAGATGTTGATAATCACCGGAGATATCTTTTTGGTAGACAAGGTGGTCAAGATCATGGAAAGCAACATGCTTATTTAAAGAAATCTGAATCAGCTCACTTGCAAAATTCAAGTAAGAGCAGGAGCGGATCTGATCCTAACAATGCATCCTTGGACAGGCAGATTGAGCTACAAAAGTCTAATGTTCCTTCCAATAACTCATATTTCAAAGGATCACCTACCTCCCATTTTAGTAGAGGAGGTAGTTTGCCTACTCAGTACCAGCCTTTAGATGGTACAAATTCGTCATTTAGTAATTATGGTATGAGTGGGTATGCTGGAAATCCAGCATTGGCATCCTTGATGACTAATCAACTTGGCACTGGTAATCTGCCTCCATTGTTTGAAACGGTTGCTGCAGCATCAGCAATGGCATCCCCTGGAATGGACTCAAGAATTCTTGGAAGTGGTTTGGCTTCTGGAGCTACTGCTCCATCTGATGTGCACAATCTTGGTAGGATGGGAAATCAAATTCCAGGCAGTGCTCTCCAGGCCCCTTTTGTCGATCCCATGTATCATCAGTACCTCAGAACATCTGAGTATGCAGCACAACTTGGAGCTCTTAGTGACCCCTCTGTCGACAGGACCTACTTAGGTAATTCATACATGAACTTACTTGAGCTTCAGAAAGCTTATCTTGGGTCTATTCTCTCACCTCAGAAATCTCAATACAATGTACCACTGGGTGGTAAATCAGGAAGCTCCACTCCTCATGGTTATTATGGAAATCCTGCATATGGTGTTGGGTTGTCTTATCCAGGAAGTCCAATGGCGAACTCTGTAGTGTCGACTTCTCCAGTAGGACCTGGAAGTCCTGTTAGGCACAATGAACTGAATATGCGTTTTGCTTCTGGAATGAGGAATTTAGCTGGGGTAATGGGACCTTGGCATGTAGATACTGGGAACATTGATGAAAATTTTGCTTCTTCTCTGTTGGAGGAGTTTAAAAGCAACAAAACAAAGTGTTTTGAGCTTTCTGAAATTGCTGGTCACGTTGTGGAATTCAGTGCCGATCAATATGGGAGCCGATTTATTCAACAAAAGCTTGAAACAGCTACTACTGAGGAAAAAAACATGGTTTATCAGGAAATCATGCCACATGCCCTTGCTTTGATGACTGATGTCTTTGGTAATTATGTGGTTCAAAAGTTTTTTGAGCATGGACTTGCAGCCCAGAGAAGAGAATTGGCCAACAAACTTCTTGGCCATGTTCTGACACTGAGCCTTCAAATGTATGGCTGCCGAGTCATCCAGAAGGCCATCGAAGTTGTTGATCTGGACCAGAAGATAGAGATGGTGCAAGAGCTTGATGGTAATGTCATGCGCTGTGTGCGTGATCAGAATGGTAACCATGTCATTCAGAAGTGCATTGAATGTGTCCCTGAAGATGCAATCCATTTTATTGTCTCAACTTTTTTTGATCAAGTCGTTACTCTCTCAACCCATCCATACGGTTGCCGTGTGATACAGAGAGTACTGGAGCACTGCAAAGATCCTACAACACAGCAGAAAGTTATGGATGAAATTTTAGGGGCAGTTAGCATGTTAGCTCAGGACCAGTATGGCAACTACGTTGTTCAGCATGTTCTGGAGCATGGGAAGCCTCATGAGCGGTCTTCTATAATAAAGGAATTAGCAGGCAAGATTGTTCAGATGAGTCAACAGAAGTTTGCATCCAATGTTGTGGAGAAATGTTTGACCTTTGGAGGTCCTTCTGAGCGCCAATTACTAGTACATGAGATGCTTGGCTCCACAGATGAAAATGAGCCTCTTCAGGCCATGATGAAAGATCAGTTTGCAAATTACGTTGTACAAAAGGTGCTGGAAACATGTGATGATCAGCAGCGCGAACTGATTCTTTCACGAATTAAGGTTCATTTAAATGCATTGAAGAAGTACACCTATGGGAAGCACATCGTTGCACGTGTAGAGAAACTTGTTGCTGCTGGAGGTATGATGTGA 3123 0.4476 MLSEFERRPMIGSNEGSFGDELEKEIGMLLREQRRQEADDRERELNIFRSGSAPPTVEGSLSAVGGLFGGGGGGGAAGASGAFSEFQGTRDVNGIVSEEELRSDPAYLTYYYSNVNLNPRLPPPLMSKEDWRFQQRLKGGASVLGGIGDRRKVNRTEENGGRSMFSTPPGFNMRKQESEVDNEKTRGTAEWGGDGLIGLPGLGLSKQKSFAEIFQDDLGGNTSVTGPPSRPASRNAFDDNDIISSAEAELAHLRRESTTTDAPRPGTNVQGSSASQNTGLPASYSYAAAVGSSLSRSTTPDPQHVARAPSPCITPIGGGRAIASDKRGVSSPDGFDGVSSGINGSSDLMAALSVMNLSADDMLDGDNHLPSQVESDVDNHRRYLFGRQGGQDHGKQHAYLKKSESAHLQNSSKSRSGSDPNNASLDRQIELQKSNVPSNNSYFKGSPTSHFSRGGSLPTQYQPLDGTNSSFSNYGMSGYAGNPALASLMTNQLGTGNLPPLFETVAAASAMASPGMDSRILGSGLASGATAPSDVHNLGRMGNQIPGSALQAPFVDPMYHQYLRTSEYAAQLGALSDPSVDRTYLGNSYMNLLELQKAYLGSILSPQKSQYNVPLGGKSGSSTPHGYYGNPAYGVGLSYPGSPMANSVVSTSPVGPGSPVRHNELNMRFASGMRNLAGVMGPWHVDTGNIDENFASSLLEEFKSNKTKCFELSEIAGHVVEFSADQYGSRFIQQKLETATTEEKNMVYQEIMPHALALMTDVFGNYVVQKFFEHGLAAQRRELANKLLGHVLTLSLQMYGCRVIQKAIEVVDLDQKIEMVQELDGNVMRCVRDQNGNHVIQKCIECVPEDAIHFIVSTFFDQVVTLSTHPYGCRVIQRVLEHCKDPTTQQKVMDEILGAVSMLAQDQYGNYVVQHVLEHGKPHERSSIIKELAGKIVQMSQQKFASNVVEKCLTFGGPSERQLLVHEMLGSTDENEPLQAMMKDQFANYVVQKVLETCDDQQRELILSRIKVHLNALKKYTYGKHIVARVEKLVAAGGMM 1040
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu5g02115 1040 MobiDBLite consensus disorder prediction 153 196 - -
Vimu5g02115 1040 MobiDBLite consensus disorder prediction 293 338 - -
Vimu5g02115 1040 FunFam Pumilio homolog 1 isoform 2 693 1039 - -
Vimu5g02115 1040 ProSiteProfiles Pumilio RNA-binding repeat profile. 967 1008 IPR001313 GO:0003723
Vimu5g02115 1040 Gene3D - 694 1037 IPR011989 -
Vimu5g02115 1040 SUPERFAMILY ARM repeat 697 1031 IPR016024 -
Vimu5g02115 1040 MobiDBLite consensus disorder prediction 385 402 - -
Vimu5g02115 1040 ProSiteProfiles Pumilio RNA-binding repeat profile. 786 821 IPR001313 GO:0003723
Vimu5g02115 1040 ProSiteProfiles Pumilio RNA-binding repeat profile. 931 966 IPR001313 GO:0003723
Vimu5g02115 1040 MobiDBLite consensus disorder prediction 218 240 - -
Vimu5g02115 1040 ProSiteProfiles Pumilio RNA-binding repeat profile. 895 930 IPR001313 GO:0003723
Vimu5g02115 1040 SMART pum_5 822 857 IPR001313 GO:0003723
Vimu5g02115 1040 SMART pum_5 786 821 IPR001313 GO:0003723
Vimu5g02115 1040 SMART pum_5 973 1008 IPR001313 GO:0003723
Vimu5g02115 1040 SMART pum_5 714 749 IPR001313 GO:0003723
Vimu5g02115 1040 SMART pum_5 858 894 IPR001313 GO:0003723
Vimu5g02115 1040 SMART pum_5 750 785 IPR001313 GO:0003723
Vimu5g02115 1040 SMART pum_5 931 966 IPR001313 GO:0003723
Vimu5g02115 1040 SMART pum_5 895 930 IPR001313 GO:0003723
Vimu5g02115 1040 PANTHER RNA BINDING PROTEIN PUMILIO-RELATED 107 1033 - -
Vimu5g02115 1040 ProSiteProfiles Pumilio RNA-binding repeat profile. 822 857 IPR001313 GO:0003723
Vimu5g02115 1040 Pfam Pumilio-family RNA binding repeat 981 1010 IPR001313 GO:0003723
Vimu5g02115 1040 Pfam Pumilio-family RNA binding repeat 718 752 IPR001313 GO:0003723
Vimu5g02115 1040 Pfam Pumilio-family RNA binding repeat 833 856 IPR001313 GO:0003723
Vimu5g02115 1040 Pfam Pumilio-family RNA binding repeat 901 932 IPR001313 GO:0003723
Vimu5g02115 1040 Pfam Pumilio-family RNA binding repeat 754 787 IPR001313 GO:0003723
Vimu5g02115 1040 Pfam Pumilio-family RNA binding repeat 936 969 IPR001313 GO:0003723
Vimu5g02115 1040 Pfam Pumilio-family RNA binding repeat 862 897 IPR001313 GO:0003723
Vimu5g02115 1040 Pfam Pumilio-family RNA binding repeat 790 823 IPR001313 GO:0003723
Vimu5g02115 1040 Pfam Nucleic acid binding protein NABP 307 713 IPR012940 -
Vimu5g02115 1040 MobiDBLite consensus disorder prediction 260 280 - -
Vimu5g02115 1040 ProSiteProfiles Pumilio RNA-binding repeat profile. 858 894 IPR001313 GO:0003723
Vimu5g02115 1040 MobiDBLite consensus disorder prediction 385 464 - -
Vimu5g02115 1040 ProSiteProfiles Pumilio homology domain (PUM-HD) profile. 694 1034 IPR033133 GO:0003723
Vimu5g02115 1040 ProSiteProfiles Pumilio RNA-binding repeat profile. 714 749 IPR001313 GO:0003723
Vimu5g02115 1040 ProSiteProfiles Pumilio RNA-binding repeat profile. 750 785 IPR001313 GO:0003723
Vimu5g02115 1040 MobiDBLite consensus disorder prediction 255 280 - -
Vimu5g02115 1040 CDD Pumilio 710 1030 IPR033712 GO:0003723
Vimu5g02115 1040 MobiDBLite consensus disorder prediction 403 464 - -
Vimu5g02115 1040 MobiDBLite consensus disorder prediction 159 173 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu5g02115 Vimu-Chr5 32771017 32776795 Dispersed/Proximal
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu5g02115 K17943 - gmx:100803806 1820.44
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu5g02115 5 32771017 32776795 Vimu5g02115 5 32771017 32776795 ECH