Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu5g02074 ATGATTGTGGTGAATTACAAGGGCGAGGAGAAACAGTTTTCCGCCGAAGAAATATCTTCCATGGTTCTAATCAAGATGAAGGAGATTGCGGAGGCCTTTCTCGGATCCACAGTGAAGAATGCCGTGGTTACTGTCCCCGCTTATTTCAATGACTCACAGCGTCAAGCTACCAAGGACGCTGGGGTCATTTCTGGGCTCAATGTTATGCGTATTATTAACGAACCTACTGCGGCTGCCATTGCTTACGGGCTTGACAAAAAGGCCACTACCTCTGGGGAGAAGAACGTGCTCATATTTGACCTTGGTGGTGGGACTTTTGATGTGTCCCTTCTCACCATTGAGGAAGGAATTTTTGAGGTGAAAGCCACCGCTGGTGATACTCACTTGGGAGGTGAAGATTTTGATAACAGAATGGTGAACCATTTCGTTCAGGAGTTCAAGAGGAAGAACAAGAAGGATATTAGTGGAAATGCGCGAGCATTGAGGAGGTTGAGAACTGCATGTGAGAGGGCGAAGAGGACTCTCTCTTCCACCGCTCAAACCACCATCGAGATTGATTCCTTGTATGAGGGTATTGACTTCTACACAACCATCACCCGTGCGAGATTTGAAGAGCTGAACATGGATCTCTTCAGGAAATGCATGGAGCCCGTGGAGAAGTGTTTGCGAGATGCCAAGATGGATAAGAGCACAGTCCATGATGTTGTTCTTGTCGGTGGTTCCACCAGAATACCCAAGGTTCAACAGTTATTGCAGGACTTCTTCAATGGGAAGGAGCTCTGCAAGAGCATCAACCCCGATGAAGCTGTTGCCTATGGTGCTGCAGTGCAGGCTGCTATTCTCAGTGGTGAGGGTAATGAGAAAGTTCAGGATCTTCTGTTGTTGGATGTTAGCCCTCTCTCCCTGGGTTTGGAGACAGCAGGAGGTGTCATGACTGTGTTGATTCCCAGAAACACAACCATTCCCACCAAGAAGGAGCAGGTGTTTTCAACCTACTCGGACAACCAGCCCGGTGTGTTGATTCAGGTCTATGAAGGTGAACGTACGAGGACTCGCGATAACAATTTGCTCGGAAAATTCGAGCTCTCTGGAATTCCTCCTGCCCCGAGAGGTGTTCCCCAGATCAATGTCTGCTTTGATATGGATGCCAACGGTATATTAAACGTGTCTGCAGAGGACAAGACGACTGGACAAAAGAATAAGATAACAATTACCAACGACAAGGGTAGGCTTTCCAAAGAAGAGATTGAAAAGATGGTGCAGGAAGCTGAGAAATACAAGGCCGAGGACGAGGAGCATAAGAAAAAGGTGGAAGCCAAAAATTCATTGGAAAATTATGCCTATAACATGAGGAACACAATTAAAGATGAAAAGATTGCTTCCAAGTTGCCTGCTGATGATAAGAAGAAAATAGAAGATGCTATTGATCAAGCCATTCAATGGCTGGATGGGAACCAACTTGGTGAGGCTGATGAATTTGAGGACAAGATGAAGGAGTTGGAGAGCATATGCAATCCCATCATCGCTAAGATGTACCAAGGTGCTGGTGGTGATGCTGGTGGAGCCATGGATGAGGATGGTCCTGCTCCTGCTCCTGCCAGTGGAAGCGGTGCTGGACCCAAAATTGAGGAAGTCGATTAA 1641 0.4698 MIVVNYKGEEKQFSAEEISSMVLIKMKEIAEAFLGSTVKNAVVTVPAYFNDSQRQATKDAGVISGLNVMRIINEPTAAAIAYGLDKKATTSGEKNVLIFDLGGGTFDVSLLTIEEGIFEVKATAGDTHLGGEDFDNRMVNHFVQEFKRKNKKDISGNARALRRLRTACERAKRTLSSTAQTTIEIDSLYEGIDFYTTITRARFEELNMDLFRKCMEPVEKCLRDAKMDKSTVHDVVLVGGSTRIPKVQQLLQDFFNGKELCKSINPDEAVAYGAAVQAAILSGEGNEKVQDLLLLDVSPLSLGLETAGGVMTVLIPRNTTIPTKKEQVFSTYSDNQPGVLIQVYEGERTRTRDNNLLGKFELSGIPPAPRGVPQINVCFDMDANGILNVSAEDKTTGQKNKITITNDKGRLSKEEIEKMVQEAEKYKAEDEEHKKKVEAKNSLENYAYNMRNTIKDEKIASKLPADDKKKIEDAIDQAIQWLDGNQLGEADEFEDKMKELESICNPIIAKMYQGAGGDAGGAMDEDGPAPAPASGSGAGPKIEEVD 546
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu5g02074 546 Gene3D - 441 514 IPR029048 -
Vimu5g02074 546 FunFam Heat shock 70 kDa protein 434 546 - -
Vimu5g02074 546 Pfam Hsp70 protein 2 513 IPR013126 GO:0005524|GO:0140662
Vimu5g02074 546 SUPERFAMILY Actin-like ATPase domain 92 283 IPR043129 -
Vimu5g02074 546 Gene3D - 1 95 - -
Vimu5g02074 546 MobiDBLite consensus disorder prediction 514 546 - -
Vimu5g02074 546 SUPERFAMILY Heat shock protein 70kD (HSP70), peptide-binding domain 287 444 IPR029047 -
Vimu5g02074 546 Gene3D - 96 177 - -
Vimu5g02074 546 SUPERFAMILY Heat shock protein 70kD (HSP70), C-terminal subdomain 438 519 IPR029048 -
Vimu5g02074 546 Coils Coil 413 440 - -
Vimu5g02074 546 SUPERFAMILY Actin-like ATPase domain 2 86 IPR043129 -
Vimu5g02074 546 FunFam Heat shock 70 kDa 286 440 - -
Vimu5g02074 546 FunFam Heat shock cognate 70 kDa protein 2 214 261 - -
Vimu5g02074 546 PRINTS 70kDa heat shock protein signature 232 248 - -
Vimu5g02074 546 PRINTS 70kDa heat shock protein signature 104 114 - -
Vimu5g02074 546 PRINTS 70kDa heat shock protein signature 291 310 - -
Vimu5g02074 546 PRINTS 70kDa heat shock protein signature 264 284 - -
Vimu5g02074 546 PRINTS 70kDa heat shock protein signature 41 61 - -
Vimu5g02074 546 PRINTS 70kDa heat shock protein signature 372 388 - -
Vimu5g02074 546 FunFam Heat shock 70 kDa protein 94 159 - -
Vimu5g02074 546 ProSitePatterns Heat shock hsp70 proteins family signature 3. 235 249 IPR018181 -
Vimu5g02074 546 Gene3D - 180 266 - -
Vimu5g02074 546 FunFam Heat shock 70 kDa 130 213 - -
Vimu5g02074 546 Gene3D Substrate Binding Domain Of DNAk; Chain A, domain 1 286 440 IPR029047 -
Vimu5g02074 546 ProSitePatterns Heat shock hsp70 proteins family signature 2. 98 111 IPR018181 -
Vimu5g02074 546 PANTHER HEAT SHOCK PROTEIN 70KDA 1 478 IPR013126 GO:0005524|GO:0140662
Vimu5g02074 546 FunFam Endoplasmic reticulum chaperone BiP 6 93 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu5g02074 Vimu-Chr5 32487063 32491529 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu5g02074 1 546 Calmodulin-binding Proteins AT3G12580 92.883 0.0 1024
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu5g02074 K03283 - gmx:100816111 995.727