Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu5g02071 ATGGCTCCTTCACTGTTTCTATGCATCTTCTTCATCCTCGCTGTCACCATCCTTCCCTCACCCACAGGTGCCCTTATCTTAACATTAGTTAACAACTGCAACTACACCATCTGGCCAGCCATTCAACCTAACGCCGGCCATCCAGTCCTCGCCGGCGGCGGCTTTACTCTCCACACCCTCACCCACCTCTCCATCCCCGTCCCCGATGTCCACTGGTCAGGCCGGGTCTGGGCCCGTACTGGCTGCACCCACTCCGGCACCGCCTTCTCCTGCGCCAGCGGTGACTGCGGCGGCCGTCTCCAGTGCAACGGTGCCGGTGGTGCTCCTCCCGCCTCCCTGGCGCAAGTGGAGGCCCACCACGGAAACGGCGATTCCGTCTCCTACGGCGTGAGCTTCGTCGACGGGTACAACGTCCCCATGACCGTGACCCCACACGAGGGGAAAGGAGTGTGCCCGGTGGTCGGTTGCCGCGCCGACTTGCTAGCCACGTGTCCCCCCGTGCTGCAGCACCGTGTCCCCGCCGTTCATGGACCCGTCGTCGCGTGCAAGAGCGGGTGCGAGGCTTTCCACACCGACGAGCTCTGCTGTAGGAACCACTTCAACAGCCCCCACACGTGCCGTGAGTCTGTGTACTCCACCTTCTTCAAGCACGCGTGCCCCAACACTTTCACCTACGCCCACGACAACCCCTCTCTCATGCACCAGTGTTCCTCCCCGCACGAGCTCAAGGTTATCTTTTGCCACTGA 747 0.6238 MAPSLFLCIFFILAVTILPSPTGALILTLVNNCNYTIWPAIQPNAGHPVLAGGGFTLHTLTHLSIPVPDVHWSGRVWARTGCTHSGTAFSCASGDCGGRLQCNGAGGAPPASLAQVEAHHGNGDSVSYGVSFVDGYNVPMTVTPHEGKGVCPVVGCRADLLATCPPVLQHRVPAVHGPVVACKSGCEAFHTDELCCRNHFNSPHTCRESVYSTFFKHACPNTFTYAHDNPSLMHQCSSPHELKVIFCH 248
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu5g02071 248 Pfam Thaumatin family 31 247 IPR001938 -
Vimu5g02071 248 CDD TLP-PA 26 247 - -
Vimu5g02071 248 PIRSF PR5 1 248 IPR001938 -
Vimu5g02071 248 FunFam Osmotin-like protein 26 247 - -
Vimu5g02071 248 SMART tha2 27 248 IPR001938 -
Vimu5g02071 248 Gene3D Thaumatin 26 247 IPR037176 -
Vimu5g02071 248 PRINTS Pathogenesis-related protein signature 75 86 IPR001938 -
Vimu5g02071 248 PRINTS Pathogenesis-related protein signature 87 116 IPR001938 -
Vimu5g02071 248 PRINTS Pathogenesis-related protein signature 26 38 IPR001938 -
Vimu5g02071 248 PRINTS Pathogenesis-related protein signature 238 247 IPR001938 -
Vimu5g02071 248 ProSiteProfiles Thaumatin family profile. 24 248 IPR001938 -
Vimu5g02071 248 PANTHER OS03G0233200 PROTEIN 10 247 IPR001938 -
Vimu5g02071 248 SUPERFAMILY Osmotin, thaumatin-like protein 26 247 IPR037176 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu5g02071 Vimu-Chr5 32470349 32471780 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu5g02071 1 247 Receptor kinase-like Gene Family AT5G38280 35.458 1.72e-44 156
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu5g02071 - - gmx:100814312 463.381